Hb_000504_150

Information

Type -
Description -
Location Contig504: 154249-167774
Sequence    

Annotation

kegg
ID rcu:RCOM_1064510
description RNA binding protein, putative
nr
ID XP_012072052.1
description PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
swissprot
ID F4KHD8
description Nuclear pore complex protein GP210 OS=Arabidopsis thaliana GN=GB210 PE=1 SV=1
trembl
ID B9S651
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1064510 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nuclear pore complex protein gp210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45948: 154409-157722 , PASA_asmbl_45949: 165773-166206 , PASA_asmbl_45950: 167744-188880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_150 0.0 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
2 Hb_000487_220 0.0689334452 - - eukaryotic translation elongation factor, putative [Ricinus communis]
3 Hb_004970_160 0.0792170981 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
4 Hb_003029_130 0.0944280374 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
5 Hb_001196_060 0.0945314413 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
6 Hb_001811_120 0.0996068346 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
7 Hb_000347_570 0.1003710409 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
8 Hb_000475_020 0.1006954407 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
9 Hb_000108_080 0.1013196939 - - PREDICTED: importin-5 [Jatropha curcas]
10 Hb_000011_210 0.1022609968 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
11 Hb_001417_050 0.104277125 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
12 Hb_010315_090 0.1042779265 - - suppressor of ty, putative [Ricinus communis]
13 Hb_000935_090 0.1044156571 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
14 Hb_002188_090 0.1044228157 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
15 Hb_002217_150 0.1058617492 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
16 Hb_000832_300 0.1070660204 - - -
17 Hb_002471_210 0.1088573478 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
18 Hb_000594_020 0.1093265443 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
19 Hb_102269_010 0.1100522691 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
20 Hb_004195_060 0.1104190802 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000504_150 Hb_000504_150 Hb_000487_220 Hb_000487_220 Hb_000504_150--Hb_000487_220 Hb_004970_160 Hb_004970_160 Hb_000504_150--Hb_004970_160 Hb_003029_130 Hb_003029_130 Hb_000504_150--Hb_003029_130 Hb_001196_060 Hb_001196_060 Hb_000504_150--Hb_001196_060 Hb_001811_120 Hb_001811_120 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570 Hb_000487_220--Hb_003029_130 Hb_000475_020 Hb_000475_020 Hb_000487_220--Hb_000475_020 Hb_000487_220--Hb_001811_120 Hb_000487_220--Hb_004970_160 Hb_000209_070 Hb_000209_070 Hb_000487_220--Hb_000209_070 Hb_000120_620 Hb_000120_620 Hb_004970_160--Hb_000120_620 Hb_004899_070 Hb_004899_070 Hb_004970_160--Hb_004899_070 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_002188_090 Hb_002188_090 Hb_001196_060--Hb_002188_090 Hb_000250_070 Hb_000250_070 Hb_001196_060--Hb_000250_070 Hb_001196_060--Hb_004970_160 Hb_001196_060--Hb_000487_220 Hb_001196_060--Hb_000475_020 Hb_031069_020 Hb_031069_020 Hb_001196_060--Hb_031069_020 Hb_001811_120--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_001811_120--Hb_002471_210 Hb_001811_120--Hb_000250_070 Hb_007904_180 Hb_007904_180 Hb_001811_120--Hb_007904_180 Hb_002291_070 Hb_002291_070 Hb_001811_120--Hb_002291_070 Hb_000347_570--Hb_001178_150 Hb_009151_020 Hb_009151_020 Hb_000347_570--Hb_009151_020 Hb_000347_570--Hb_001473_090 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.84006 2.50609 0.981219 0.992268 4.27691 4.35926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31078 0.384068 0.63012 2.15829 2.13198

CAGE analysis