Hb_001910_020

Information

Type -
Description -
Location Contig1910: 42926-46738
Sequence    

Annotation

kegg
ID rcu:RCOM_0692460
description hypothetical protein
nr
ID XP_012082550.1
description PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q8NBM4
description Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens GN=UBAC2 PE=1 SV=1
trembl
ID A0A067JZ75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16635 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ubiquitin-associated protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19053: 42946-69263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001910_020 0.0 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
2 Hb_035318_010 0.0712206946 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
3 Hb_000785_030 0.0810034189 - - hypothetical protein RCOM_0808030 [Ricinus communis]
4 Hb_152453_010 0.0889198133 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
5 Hb_003091_010 0.0924655832 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_073973_160 0.0926327599 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
7 Hb_001882_040 0.0947030865 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
8 Hb_000939_060 0.0948889595 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
9 Hb_000392_050 0.096562715 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
10 Hb_001894_030 0.0974612285 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
11 Hb_000787_170 0.0987096063 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
12 Hb_005408_020 0.10180329 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011609_170 0.1047349443 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
14 Hb_000375_030 0.1048182391 - - -
15 Hb_000617_220 0.1059193913 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_002942_050 0.1072727966 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
17 Hb_173178_020 0.1089540651 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
18 Hb_000640_020 0.1090129965 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
19 Hb_002411_180 0.1097731839 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
20 Hb_008725_130 0.1100705451 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001910_020 Hb_001910_020 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_000787_170 Hb_000787_170 Hb_035318_010--Hb_000787_170 Hb_035318_010--Hb_001882_040 Hb_035318_010--Hb_152453_010 Hb_000392_050 Hb_000392_050 Hb_035318_010--Hb_000392_050 Hb_000939_060 Hb_000939_060 Hb_035318_010--Hb_000939_060 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_000059_140 Hb_000059_140 Hb_000785_030--Hb_000059_140 Hb_005846_020 Hb_005846_020 Hb_152453_010--Hb_005846_020 Hb_000976_080 Hb_000976_080 Hb_152453_010--Hb_000976_080 Hb_000345_530 Hb_000345_530 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_152453_010--Hb_000392_050 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001163_120 Hb_001163_120 Hb_001882_040--Hb_001163_120 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_000336_270 Hb_000336_270 Hb_001882_040--Hb_000336_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.872 62.8085 69.2893 55.6093 119.178 132.58
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5187 41.5795 25.3453 23.2811 17.6878

CAGE analysis