Hb_003872_010

Information

Type -
Description -
Location Contig3872: 14878-17669
Sequence    

Annotation

kegg
ID pmum:103331595
description actin-related protein 2/3 complex subunit 5A
nr
ID XP_007202746.1
description hypothetical protein PRUPE_ppa013215mg [Prunus persica]
swissprot
ID Q9M117
description Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana GN=ARPC5A PE=1 SV=2
trembl
ID M5WAX3
description Actin-related protein 2/3 complex subunit 5 OS=Prunus persica GN=PRUPE_ppa013215mg PE=3 SV=1
Gene Ontology
ID GO:0005885
description actin-related protein 2 3 complex subunit 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003872_010 0.0 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
2 Hb_004374_080 0.1282228207 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
3 Hb_007803_060 0.135447581 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
4 Hb_000270_870 0.1400584571 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
5 Hb_002000_060 0.142000505 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
6 Hb_000661_110 0.1420327362 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
7 Hb_147505_010 0.1465652668 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
8 Hb_000516_040 0.1572721812 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
9 Hb_001021_220 0.1576260566 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
10 Hb_002471_180 0.15784105 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_000599_080 0.1603725821 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
12 Hb_000172_540 0.1604258539 - - hypothetical protein POPTR_0005s08350g [Populus trichocarpa]
13 Hb_000566_100 0.1606155058 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
14 Hb_000139_230 0.1608887125 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
15 Hb_000413_070 0.1630142324 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000270_160 0.163688614 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
17 Hb_001191_130 0.1641777692 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]
18 Hb_132840_110 0.1643612156 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
19 Hb_000563_600 0.1649472401 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
20 Hb_011344_160 0.1655477298 - - PREDICTED: primary amine oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_003872_010 Hb_003872_010 Hb_004374_080 Hb_004374_080 Hb_003872_010--Hb_004374_080 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_000270_870 Hb_000270_870 Hb_003872_010--Hb_000270_870 Hb_002000_060 Hb_002000_060 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_147505_010 Hb_147505_010 Hb_003872_010--Hb_147505_010 Hb_004374_080--Hb_002000_060 Hb_000270_160 Hb_000270_160 Hb_004374_080--Hb_000270_160 Hb_000139_230 Hb_000139_230 Hb_004374_080--Hb_000139_230 Hb_012404_070 Hb_012404_070 Hb_004374_080--Hb_012404_070 Hb_000566_100 Hb_000566_100 Hb_004374_080--Hb_000566_100 Hb_001500_050 Hb_001500_050 Hb_007803_060--Hb_001500_050 Hb_009620_050 Hb_009620_050 Hb_007803_060--Hb_009620_050 Hb_000107_400 Hb_000107_400 Hb_007803_060--Hb_000107_400 Hb_116349_030 Hb_116349_030 Hb_007803_060--Hb_116349_030 Hb_000879_160 Hb_000879_160 Hb_007803_060--Hb_000879_160 Hb_000563_640 Hb_000563_640 Hb_007803_060--Hb_000563_640 Hb_002804_020 Hb_002804_020 Hb_000270_870--Hb_002804_020 Hb_001776_030 Hb_001776_030 Hb_000270_870--Hb_001776_030 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_000336_270 Hb_000336_270 Hb_002000_060--Hb_000336_270 Hb_002000_060--Hb_147505_010 Hb_000563_600 Hb_000563_600 Hb_002000_060--Hb_000563_600 Hb_002000_060--Hb_000139_230 Hb_001163_120 Hb_001163_120 Hb_002000_060--Hb_001163_120 Hb_000050_190 Hb_000050_190 Hb_000661_110--Hb_000050_190 Hb_132840_110 Hb_132840_110 Hb_000661_110--Hb_132840_110 Hb_002876_320 Hb_002876_320 Hb_000661_110--Hb_002876_320 Hb_001021_220 Hb_001021_220 Hb_000661_110--Hb_001021_220 Hb_001268_280 Hb_001268_280 Hb_000661_110--Hb_001268_280 Hb_002081_010 Hb_002081_010 Hb_000661_110--Hb_002081_010 Hb_003929_140 Hb_003929_140 Hb_147505_010--Hb_003929_140 Hb_001638_300 Hb_001638_300 Hb_147505_010--Hb_001638_300 Hb_004629_010 Hb_004629_010 Hb_147505_010--Hb_004629_010 Hb_000661_020 Hb_000661_020 Hb_147505_010--Hb_000661_020 Hb_147505_010--Hb_000563_600 Hb_000028_510 Hb_000028_510 Hb_147505_010--Hb_000028_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.951524 0.446333 0.378631 0.728736 0.434463 0.478303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.277778 0.0546024 0.295716 0.132706 0.546843

CAGE analysis