Hb_001776_030

Information

Type -
Description -
Location Contig1776: 30630-32630
Sequence    

Annotation

kegg
ID rcu:RCOM_0912600
description hypothetical protein
nr
ID XP_002517153.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17060: 30215-32949 , PASA_asmbl_17061: 31040-32017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004619_070 0.1165104936 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
3 Hb_000270_870 0.1429459332 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
4 Hb_000413_070 0.1526617257 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002471_110 0.1590750863 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
6 Hb_002804_020 0.1678122312 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
7 Hb_003872_010 0.1704102155 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
8 Hb_000300_090 0.1807464326 - - catalytic, putative [Ricinus communis]
9 Hb_000668_090 0.1824391831 - - senescence-associated family protein [Populus trichocarpa]
10 Hb_002301_310 0.1876619889 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
11 Hb_074449_010 0.1897507322 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_000203_230 0.1903131623 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
13 Hb_001191_130 0.1903347214 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]
14 Hb_002541_020 0.1905875913 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
15 Hb_000505_080 0.1905903613 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
16 Hb_001141_410 0.1926709033 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
17 Hb_000074_100 0.1939001129 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004738_030 0.2005061323 - - Inactive protein kinase [Gossypium arboreum]
19 Hb_005048_140 0.200698908 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004374_080 0.2035059988 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_030 Hb_001776_030 Hb_004619_070 Hb_004619_070 Hb_001776_030--Hb_004619_070 Hb_000270_870 Hb_000270_870 Hb_001776_030--Hb_000270_870 Hb_000413_070 Hb_000413_070 Hb_001776_030--Hb_000413_070 Hb_002471_110 Hb_002471_110 Hb_001776_030--Hb_002471_110 Hb_002804_020 Hb_002804_020 Hb_001776_030--Hb_002804_020 Hb_003872_010 Hb_003872_010 Hb_001776_030--Hb_003872_010 Hb_004619_070--Hb_003872_010 Hb_004619_070--Hb_000270_870 Hb_004619_070--Hb_000413_070 Hb_004374_080 Hb_004374_080 Hb_004619_070--Hb_004374_080 Hb_004619_070--Hb_002804_020 Hb_000270_870--Hb_002804_020 Hb_000270_870--Hb_003872_010 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030 Hb_003462_060 Hb_003462_060 Hb_002471_110--Hb_003462_060 Hb_000505_080 Hb_000505_080 Hb_002471_110--Hb_000505_080 Hb_000029_110 Hb_000029_110 Hb_002471_110--Hb_000029_110 Hb_001541_100 Hb_001541_100 Hb_002471_110--Hb_001541_100 Hb_012098_150 Hb_012098_150 Hb_002471_110--Hb_012098_150 Hb_000703_290 Hb_000703_290 Hb_002471_110--Hb_000703_290 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_002541_020 Hb_002541_020 Hb_002804_020--Hb_002541_020 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_074449_010 Hb_074449_010 Hb_002804_020--Hb_074449_010 Hb_002804_020--Hb_000413_070 Hb_003872_010--Hb_004374_080 Hb_007803_060 Hb_007803_060 Hb_003872_010--Hb_007803_060 Hb_002000_060 Hb_002000_060 Hb_003872_010--Hb_002000_060 Hb_000661_110 Hb_000661_110 Hb_003872_010--Hb_000661_110 Hb_147505_010 Hb_147505_010 Hb_003872_010--Hb_147505_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7404 4.1779 7.19241 15.0226 2.9087 7.95139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65405 0.88738 1.00967 2.03349 11.0273

CAGE analysis