Hb_002541_020

Information

Type -
Description -
Location Contig2541: 66239-82334
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012073431.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
swissprot
ID Q9FIZ3
description LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2
trembl
ID B9RVA8
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich receptor-like kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26563: 74178-75051 , PASA_asmbl_26564: 75374-80870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002541_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
2 Hb_002804_020 0.1299410762 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
3 Hb_000413_070 0.1446277884 - - conserved hypothetical protein [Ricinus communis]
4 Hb_074449_010 0.1465583932 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_000120_550 0.1472420832 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
6 Hb_165279_010 0.1481221614 - - Kiwellin, putative [Ricinus communis]
7 Hb_002818_050 0.1515101832 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_010883_140 0.1539641013 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
9 Hb_003998_010 0.1581518921 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
10 Hb_001519_040 0.1590338819 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
11 Hb_000034_080 0.1593616637 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
12 Hb_000656_300 0.1597375275 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
13 Hb_001349_030 0.1614977031 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
14 Hb_000588_080 0.1629069771 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
15 Hb_029866_100 0.1629479813 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
16 Hb_003688_090 0.163769937 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
17 Hb_010942_020 0.1638011048 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000261_230 0.1718083195 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
19 Hb_005015_060 0.1728706242 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
20 Hb_001085_070 0.1742253174 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]

Gene co-expression network

sample Hb_002541_020 Hb_002541_020 Hb_002804_020 Hb_002804_020 Hb_002541_020--Hb_002804_020 Hb_000413_070 Hb_000413_070 Hb_002541_020--Hb_000413_070 Hb_074449_010 Hb_074449_010 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_002818_050 Hb_002818_050 Hb_002541_020--Hb_002818_050 Hb_000733_050 Hb_000733_050 Hb_002804_020--Hb_000733_050 Hb_029866_100 Hb_029866_100 Hb_002804_020--Hb_029866_100 Hb_000270_870 Hb_000270_870 Hb_002804_020--Hb_000270_870 Hb_002804_020--Hb_074449_010 Hb_002804_020--Hb_000413_070 Hb_000630_030 Hb_000630_030 Hb_000413_070--Hb_000630_030 Hb_001349_030 Hb_001349_030 Hb_000413_070--Hb_001349_030 Hb_004355_040 Hb_004355_040 Hb_000413_070--Hb_004355_040 Hb_000588_080 Hb_000588_080 Hb_000413_070--Hb_000588_080 Hb_001059_130 Hb_001059_130 Hb_000413_070--Hb_001059_130 Hb_000580_030 Hb_000580_030 Hb_000413_070--Hb_000580_030 Hb_001488_340 Hb_001488_340 Hb_074449_010--Hb_001488_340 Hb_161478_010 Hb_161478_010 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_074449_010--Hb_000270_870 Hb_032990_010 Hb_032990_010 Hb_000120_550--Hb_032990_010 Hb_003897_040 Hb_003897_040 Hb_000120_550--Hb_003897_040 Hb_161994_030 Hb_161994_030 Hb_000120_550--Hb_161994_030 Hb_000737_030 Hb_000737_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_116349_060 Hb_116349_060 Hb_000120_550--Hb_116349_060 Hb_165279_010--Hb_074449_010 Hb_000087_030 Hb_000087_030 Hb_165279_010--Hb_000087_030 Hb_003688_090 Hb_003688_090 Hb_165279_010--Hb_003688_090 Hb_004117_160 Hb_004117_160 Hb_165279_010--Hb_004117_160 Hb_001014_110 Hb_001014_110 Hb_165279_010--Hb_001014_110 Hb_010942_020 Hb_010942_020 Hb_002818_050--Hb_010942_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_001519_040 Hb_001519_040 Hb_002818_050--Hb_001519_040 Hb_003605_040 Hb_003605_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39511 1.25813 2.40218 3.41192 1.13962 2.06691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76072 0.430898 0.0324574 1.64973 1.72024

CAGE analysis