Hb_003605_040

Information

Type -
Description -
Location Contig3605: 32237-40624
Sequence    

Annotation

kegg
ID vvi:100247683
description somatic embryogenesis receptor kinase-like
nr
ID XP_012089681.1
description PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID A0A067JG38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01960 PE=3 SV=1
Gene Ontology
ID GO:0005515
description somatic embryogenesis receptor kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37127: 32288-40610 , PASA_asmbl_37128: 34202-34613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_040 0.0 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
2 Hb_008119_030 0.0924718273 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
3 Hb_164010_050 0.1275133989 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
4 Hb_009222_070 0.1299105238 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
5 Hb_002498_240 0.1449891943 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
6 Hb_009808_010 0.1475044214 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
7 Hb_000818_100 0.148057176 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
8 Hb_000134_120 0.1487844331 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
9 Hb_000320_050 0.151618866 - - bcr-associated protein, bap, putative [Ricinus communis]
10 Hb_003964_080 0.1524943012 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
11 Hb_004730_020 0.159095033 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
12 Hb_000668_060 0.160670741 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
13 Hb_012762_060 0.1612570247 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
14 Hb_006829_070 0.1637841862 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
15 Hb_001847_050 0.1639142359 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
16 Hb_000258_220 0.1646458983 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
17 Hb_000260_490 0.1655266296 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_002026_020 0.1665332208 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
19 Hb_001268_340 0.1666217527 - - Actin, putative [Ricinus communis]
20 Hb_000889_100 0.1668845609 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]

Gene co-expression network

sample Hb_003605_040 Hb_003605_040 Hb_008119_030 Hb_008119_030 Hb_003605_040--Hb_008119_030 Hb_164010_050 Hb_164010_050 Hb_003605_040--Hb_164010_050 Hb_009222_070 Hb_009222_070 Hb_003605_040--Hb_009222_070 Hb_002498_240 Hb_002498_240 Hb_003605_040--Hb_002498_240 Hb_009808_010 Hb_009808_010 Hb_003605_040--Hb_009808_010 Hb_000818_100 Hb_000818_100 Hb_003605_040--Hb_000818_100 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010 Hb_051257_010 Hb_051257_010 Hb_164010_050--Hb_051257_010 Hb_000866_070 Hb_000866_070 Hb_164010_050--Hb_000866_070 Hb_000000_330 Hb_000000_330 Hb_164010_050--Hb_000000_330 Hb_000258_220 Hb_000258_220 Hb_164010_050--Hb_000258_220 Hb_074399_010 Hb_074399_010 Hb_164010_050--Hb_074399_010 Hb_000503_020 Hb_000503_020 Hb_164010_050--Hb_000503_020 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_083628_010 Hb_083628_010 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_001623_110 Hb_001623_110 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_001160_110 Hb_001160_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_002498_240--Hb_074399_010 Hb_001123_110 Hb_001123_110 Hb_002498_240--Hb_001123_110 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020 Hb_002217_320 Hb_002217_320 Hb_009808_010--Hb_002217_320 Hb_000042_110 Hb_000042_110 Hb_009808_010--Hb_000042_110 Hb_006925_050 Hb_006925_050 Hb_009808_010--Hb_006925_050 Hb_006829_070 Hb_006829_070 Hb_009808_010--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_009808_010--Hb_001847_050 Hb_029695_050 Hb_029695_050 Hb_000818_100--Hb_029695_050 Hb_000818_100--Hb_009247_010 Hb_000818_100--Hb_009222_070 Hb_000818_100--Hb_000503_020 Hb_000098_050 Hb_000098_050 Hb_000818_100--Hb_000098_050 Hb_000134_120 Hb_000134_120 Hb_000818_100--Hb_000134_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.56367 3.60656 12.2047 19.0489 2.8364 4.02127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55089 1.23639 1.3734 2.5787 3.47011

CAGE analysis