Hb_018133_100

Information

Type -
Description -
Location Contig18133: 74565-77498
Sequence    

Annotation

kegg
ID rcu:RCOM_1509970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002511369.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9RAZ4
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1509970 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17628: 74436-74865 , PASA_asmbl_17629: 75058-75685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_100 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_119583_020 0.133665076 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
3 Hb_002026_020 0.1350987356 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
4 Hb_001328_050 0.1399203733 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
5 Hb_002151_010 0.1493494673 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
6 Hb_004324_210 0.1511064423 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
7 Hb_000042_110 0.1575003252 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
8 Hb_008119_030 0.1582821219 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
9 Hb_000260_490 0.1622947574 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
10 Hb_000915_130 0.1641117514 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
11 Hb_002900_150 0.1651289343 - - PREDICTED: syntaxin-81 [Jatropha curcas]
12 Hb_001123_110 0.1662593142 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004738_030 0.1670961447 - - Inactive protein kinase [Gossypium arboreum]
14 Hb_001579_300 0.1690445013 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
15 Hb_005511_130 0.1708729703 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
16 Hb_000984_220 0.1716101761 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
17 Hb_004907_090 0.1732617182 - - ATP binding protein, putative [Ricinus communis]
18 Hb_009808_010 0.1759617108 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
19 Hb_006925_050 0.1791647893 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
20 Hb_012753_210 0.1792463426 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_018133_100 Hb_018133_100 Hb_119583_020 Hb_119583_020 Hb_018133_100--Hb_119583_020 Hb_002026_020 Hb_002026_020 Hb_018133_100--Hb_002026_020 Hb_001328_050 Hb_001328_050 Hb_018133_100--Hb_001328_050 Hb_002151_010 Hb_002151_010 Hb_018133_100--Hb_002151_010 Hb_004324_210 Hb_004324_210 Hb_018133_100--Hb_004324_210 Hb_000042_110 Hb_000042_110 Hb_018133_100--Hb_000042_110 Hb_001123_110 Hb_001123_110 Hb_119583_020--Hb_001123_110 Hb_006925_050 Hb_006925_050 Hb_119583_020--Hb_006925_050 Hb_000984_220 Hb_000984_220 Hb_119583_020--Hb_000984_220 Hb_001579_300 Hb_001579_300 Hb_119583_020--Hb_001579_300 Hb_007304_030 Hb_007304_030 Hb_119583_020--Hb_007304_030 Hb_002026_020--Hb_001328_050 Hb_006829_070 Hb_006829_070 Hb_002026_020--Hb_006829_070 Hb_000030_020 Hb_000030_020 Hb_002026_020--Hb_000030_020 Hb_012762_060 Hb_012762_060 Hb_002026_020--Hb_012762_060 Hb_002900_150 Hb_002900_150 Hb_002026_020--Hb_002900_150 Hb_003680_030 Hb_003680_030 Hb_002026_020--Hb_003680_030 Hb_001328_050--Hb_002900_150 Hb_000968_060 Hb_000968_060 Hb_001328_050--Hb_000968_060 Hb_000915_130 Hb_000915_130 Hb_001328_050--Hb_000915_130 Hb_003090_160 Hb_003090_160 Hb_001328_050--Hb_003090_160 Hb_004158_050 Hb_004158_050 Hb_002151_010--Hb_004158_050 Hb_000120_350 Hb_000120_350 Hb_002151_010--Hb_000120_350 Hb_002151_010--Hb_002900_150 Hb_002151_010--Hb_004324_210 Hb_004907_090 Hb_004907_090 Hb_002151_010--Hb_004907_090 Hb_002151_010--Hb_000984_220 Hb_007594_080 Hb_007594_080 Hb_004324_210--Hb_007594_080 Hb_001250_040 Hb_001250_040 Hb_004324_210--Hb_001250_040 Hb_004324_210--Hb_004907_090 Hb_004324_210--Hb_000042_110 Hb_007576_070 Hb_007576_070 Hb_004324_210--Hb_007576_070 Hb_008494_030 Hb_008494_030 Hb_004324_210--Hb_008494_030 Hb_000260_490 Hb_000260_490 Hb_000042_110--Hb_000260_490 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.918539 1.70721 4.80734 4.77976 1.35541 1.09962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.550067 0.42116 0.492147 0.0371258 1.77146

CAGE analysis