Hb_004324_210

Information

Type -
Description -
Location Contig4324: 125102-129182
Sequence    

Annotation

kegg
ID rcu:RCOM_1580440
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002513587.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID Q9ZNX9
description RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SIGE PE=1 SV=1
trembl
ID B9RIL8
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1580440 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rna polymerase sigma factor chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42320: 125164-129134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_210 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_007594_080 0.1203175224 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
3 Hb_001250_040 0.1213034977 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
4 Hb_004907_090 0.1234754912 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000042_110 0.1300989058 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
6 Hb_007576_070 0.1317737817 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
7 Hb_008494_030 0.1322166179 - - catalytic, putative [Ricinus communis]
8 Hb_004158_050 0.1339547592 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
9 Hb_001021_210 0.1363611316 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_002151_010 0.1383742153 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
11 Hb_000836_350 0.1389638283 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
12 Hb_001571_030 0.1403324848 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
13 Hb_010620_050 0.1415279127 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
14 Hb_000529_130 0.1423680076 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
15 Hb_000562_070 0.1451526825 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
16 Hb_001582_020 0.1486466185 - - plastid acyl-ACP thioesterase [Vernicia fordii]
17 Hb_002686_300 0.1500610399 - - adenosine diphosphatase, putative [Ricinus communis]
18 Hb_003687_080 0.1505468087 - - PREDICTED: casein kinase I-like [Jatropha curcas]
19 Hb_018133_100 0.1511064423 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000968_060 0.1516361561 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_004324_210 Hb_004324_210 Hb_007594_080 Hb_007594_080 Hb_004324_210--Hb_007594_080 Hb_001250_040 Hb_001250_040 Hb_004324_210--Hb_001250_040 Hb_004907_090 Hb_004907_090 Hb_004324_210--Hb_004907_090 Hb_000042_110 Hb_000042_110 Hb_004324_210--Hb_000042_110 Hb_007576_070 Hb_007576_070 Hb_004324_210--Hb_007576_070 Hb_008494_030 Hb_008494_030 Hb_004324_210--Hb_008494_030 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_001663_130 Hb_001663_130 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_000136_020 Hb_000136_020 Hb_001250_040--Hb_000136_020 Hb_001571_030 Hb_001571_030 Hb_001250_040--Hb_001571_030 Hb_001250_040--Hb_007594_080 Hb_001624_040 Hb_001624_040 Hb_001250_040--Hb_001624_040 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_000260_490 Hb_000260_490 Hb_000042_110--Hb_000260_490 Hb_001847_060 Hb_001847_060 Hb_000042_110--Hb_001847_060 Hb_000915_130 Hb_000915_130 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_000805_200 Hb_000805_200 Hb_007576_070--Hb_000805_200 Hb_007576_070--Hb_000529_130 Hb_007576_070--Hb_001571_030 Hb_003734_080 Hb_003734_080 Hb_007576_070--Hb_003734_080 Hb_000673_010 Hb_000673_010 Hb_007576_070--Hb_000673_010 Hb_001638_330 Hb_001638_330 Hb_007576_070--Hb_001638_330 Hb_008494_030--Hb_001663_130 Hb_004158_050 Hb_004158_050 Hb_008494_030--Hb_004158_050 Hb_001623_490 Hb_001623_490 Hb_008494_030--Hb_001623_490 Hb_001999_320 Hb_001999_320 Hb_008494_030--Hb_001999_320 Hb_003849_160 Hb_003849_160 Hb_008494_030--Hb_003849_160 Hb_003687_080 Hb_003687_080 Hb_008494_030--Hb_003687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4463 17.2865 36.4459 23.2121 13.435 6.91053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.42846 3.42968 3.80286 1.80037 24.6181

CAGE analysis