Hb_007576_070

Information

Type -
Description -
Location Contig7576: 56818-63527
Sequence    

Annotation

kegg
ID rcu:RCOM_0265510
description hypothetical protein
nr
ID XP_012079657.1
description PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SWA1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0265510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57107: 59475-59940 , PASA_asmbl_57108: 41998-63495 , PASA_asmbl_57109: 41998-63495 , PASA_asmbl_57110: 41998-63495 , PASA_asmbl_57111: 41998-63495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_070 0.0 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
2 Hb_000805_200 0.1150068439 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
3 Hb_000529_130 0.117231017 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
4 Hb_001571_030 0.123260565 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
5 Hb_003734_080 0.1237122597 - - myosin vIII, putative [Ricinus communis]
6 Hb_000673_010 0.1245222905 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
7 Hb_001638_330 0.1285428015 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
8 Hb_000562_070 0.1296321721 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
9 Hb_001250_040 0.1300706768 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
10 Hb_004994_350 0.1304260161 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
11 Hb_004324_210 0.1317737817 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
12 Hb_003925_060 0.1318999407 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
13 Hb_003750_130 0.13317586 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001582_020 0.1340239634 - - plastid acyl-ACP thioesterase [Vernicia fordii]
15 Hb_000603_190 0.134639117 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
16 Hb_000997_100 0.1356524548 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
17 Hb_000836_350 0.1365310328 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
18 Hb_001277_340 0.1385814356 - - aldo/keto reductase, putative [Ricinus communis]
19 Hb_006846_170 0.1388671872 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
20 Hb_002600_070 0.1404034687 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_070 Hb_007576_070 Hb_000805_200 Hb_000805_200 Hb_007576_070--Hb_000805_200 Hb_000529_130 Hb_000529_130 Hb_007576_070--Hb_000529_130 Hb_001571_030 Hb_001571_030 Hb_007576_070--Hb_001571_030 Hb_003734_080 Hb_003734_080 Hb_007576_070--Hb_003734_080 Hb_000673_010 Hb_000673_010 Hb_007576_070--Hb_000673_010 Hb_001638_330 Hb_001638_330 Hb_007576_070--Hb_001638_330 Hb_005694_130 Hb_005694_130 Hb_000805_200--Hb_005694_130 Hb_000609_110 Hb_000609_110 Hb_000805_200--Hb_000609_110 Hb_000836_540 Hb_000836_540 Hb_000805_200--Hb_000836_540 Hb_027380_210 Hb_027380_210 Hb_000805_200--Hb_027380_210 Hb_003001_070 Hb_003001_070 Hb_000805_200--Hb_003001_070 Hb_000805_200--Hb_001571_030 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_001250_040 Hb_001250_040 Hb_001571_030--Hb_001250_040 Hb_001571_030--Hb_027380_210 Hb_000136_020 Hb_000136_020 Hb_001571_030--Hb_000136_020 Hb_002249_030 Hb_002249_030 Hb_003734_080--Hb_002249_030 Hb_007192_090 Hb_007192_090 Hb_003734_080--Hb_007192_090 Hb_002942_130 Hb_002942_130 Hb_003734_080--Hb_002942_130 Hb_004254_100 Hb_004254_100 Hb_003734_080--Hb_004254_100 Hb_000264_230 Hb_000264_230 Hb_003734_080--Hb_000264_230 Hb_000170_160 Hb_000170_160 Hb_003734_080--Hb_000170_160 Hb_001766_070 Hb_001766_070 Hb_000673_010--Hb_001766_070 Hb_008120_040 Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_001409_060 Hb_001409_060 Hb_000673_010--Hb_001409_060 Hb_008173_150 Hb_008173_150 Hb_001638_330--Hb_008173_150 Hb_001638_330--Hb_000673_010 Hb_102948_010 Hb_102948_010 Hb_001638_330--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_001638_330--Hb_001430_020 Hb_003408_060 Hb_003408_060 Hb_001638_330--Hb_003408_060 Hb_000555_020 Hb_000555_020 Hb_001638_330--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.766 65.5576 89.9734 42.5018 28.3731 33.4368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.63381 14.9439 20.3758 7.38683 81.3271

CAGE analysis