Hb_003408_060

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3408: 62915-67257
Sequence    

Annotation

kegg
ID rcu:RCOM_1287290
description Salt-tolerance protein, putative
nr
ID XP_002534139.1
description Salt-tolerance protein, putative [Ricinus communis]
swissprot
ID Q9SID1
description B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2
trembl
ID B9T7C0
description Salt-tolerance protein, putative OS=Ricinus communis GN=RCOM_1287290 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35635: 63154-67138 , PASA_asmbl_35636: 65191-67133 , PASA_asmbl_35637: 66200-66455 , PASA_asmbl_35638: 64761-65163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003408_060 0.0 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
2 Hb_111552_010 0.1026252575 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
3 Hb_003687_130 0.1027480587 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
4 Hb_001766_070 0.1030854347 - - conserved hypothetical protein [Ricinus communis]
5 Hb_088584_010 0.1047475981 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
6 Hb_003177_070 0.113293366 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
7 Hb_012799_050 0.1134566458 - - PREDICTED: remorin [Jatropha curcas]
8 Hb_000452_030 0.1137842826 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
9 Hb_001178_030 0.1190788476 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
10 Hb_001638_330 0.1204530829 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
11 Hb_000815_310 0.1235560774 - - protein kinase, putative [Ricinus communis]
12 Hb_001582_020 0.127099712 - - plastid acyl-ACP thioesterase [Vernicia fordii]
13 Hb_000787_080 0.1293961118 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
14 Hb_002259_170 0.1311256645 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
15 Hb_008226_030 0.1328859195 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
16 Hb_000673_010 0.1330875203 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
17 Hb_001393_010 0.134617046 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
18 Hb_033152_090 0.1353351679 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
19 Hb_002876_210 0.1356392581 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
20 Hb_006846_170 0.1356984355 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]

Gene co-expression network

sample Hb_003408_060 Hb_003408_060 Hb_111552_010 Hb_111552_010 Hb_003408_060--Hb_111552_010 Hb_003687_130 Hb_003687_130 Hb_003408_060--Hb_003687_130 Hb_001766_070 Hb_001766_070 Hb_003408_060--Hb_001766_070 Hb_088584_010 Hb_088584_010 Hb_003408_060--Hb_088584_010 Hb_003177_070 Hb_003177_070 Hb_003408_060--Hb_003177_070 Hb_012799_050 Hb_012799_050 Hb_003408_060--Hb_012799_050 Hb_004774_090 Hb_004774_090 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040 Hb_003687_130--Hb_000452_030 Hb_001865_100 Hb_001865_100 Hb_003687_130--Hb_001865_100 Hb_000015_200 Hb_000015_200 Hb_003687_130--Hb_000015_200 Hb_003687_130--Hb_001766_070 Hb_000015_090 Hb_000015_090 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130 Hb_000673_010 Hb_000673_010 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001409_060 Hb_001409_060 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_088584_010--Hb_006846_170 Hb_017214_040 Hb_017214_040 Hb_088584_010--Hb_017214_040 Hb_002249_020 Hb_002249_020 Hb_088584_010--Hb_002249_020 Hb_000069_610 Hb_000069_610 Hb_088584_010--Hb_000069_610 Hb_000179_190 Hb_000179_190 Hb_088584_010--Hb_000179_190 Hb_088584_010--Hb_111552_010 Hb_000815_310 Hb_000815_310 Hb_003177_070--Hb_000815_310 Hb_001009_120 Hb_001009_120 Hb_003177_070--Hb_001009_120 Hb_033152_090 Hb_033152_090 Hb_003177_070--Hb_033152_090 Hb_000418_050 Hb_000418_050 Hb_003177_070--Hb_000418_050 Hb_000421_110 Hb_000421_110 Hb_003177_070--Hb_000421_110 Hb_003777_130 Hb_003777_130 Hb_003177_070--Hb_003777_130 Hb_012799_050--Hb_111552_010 Hb_003125_220 Hb_003125_220 Hb_012799_050--Hb_003125_220 Hb_000453_030 Hb_000453_030 Hb_012799_050--Hb_000453_030 Hb_012799_050--Hb_088584_010 Hb_001301_270 Hb_001301_270 Hb_012799_050--Hb_001301_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4979 119.271 120.642 100.615 22.2876 30.402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.425 19.2008 68.481 25.302 112.505

CAGE analysis