Hb_004158_050

Information

Type -
Description -
Location Contig4158: 85476-89544
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08280g
description POPTRDRAFT_560734; hypothetical protein
nr
ID KDP35588.1
description hypothetical protein JCGZ_09026 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09026 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41128: 85364-87396 , PASA_asmbl_41129: 87604-89596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004158_050 0.0 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
2 Hb_002026_090 0.0531806188 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
3 Hb_000327_330 0.0892169281 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001623_490 0.0918483087 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
5 Hb_003687_080 0.0940401425 - - PREDICTED: casein kinase I-like [Jatropha curcas]
6 Hb_007594_080 0.0953132723 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
7 Hb_001160_110 0.101134139 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
8 Hb_010620_050 0.1038599722 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
9 Hb_012779_080 0.1042702762 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
10 Hb_001663_130 0.1082742101 - - acyl-CoA thioesterase, putative [Ricinus communis]
11 Hb_003071_030 0.109306747 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
12 Hb_002107_050 0.1102938807 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
13 Hb_002900_150 0.1118452201 - - PREDICTED: syntaxin-81 [Jatropha curcas]
14 Hb_005665_090 0.1169966053 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
15 Hb_008494_030 0.1177772946 - - catalytic, putative [Ricinus communis]
16 Hb_006588_190 0.1190818366 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
17 Hb_000465_440 0.1193042278 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
18 Hb_000320_190 0.1204104305 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_002151_010 0.1210158435 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
20 Hb_001021_210 0.1229170198 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004158_050 Hb_004158_050 Hb_002026_090 Hb_002026_090 Hb_004158_050--Hb_002026_090 Hb_000327_330 Hb_000327_330 Hb_004158_050--Hb_000327_330 Hb_001623_490 Hb_001623_490 Hb_004158_050--Hb_001623_490 Hb_003687_080 Hb_003687_080 Hb_004158_050--Hb_003687_080 Hb_007594_080 Hb_007594_080 Hb_004158_050--Hb_007594_080 Hb_001160_110 Hb_001160_110 Hb_004158_050--Hb_001160_110 Hb_002026_090--Hb_001623_490 Hb_002026_090--Hb_000327_330 Hb_002026_090--Hb_001160_110 Hb_001663_130 Hb_001663_130 Hb_002026_090--Hb_001663_130 Hb_002026_090--Hb_003687_080 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_000327_330--Hb_003687_080 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_003687_080--Hb_001160_110 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_003687_080--Hb_000318_220 Hb_001279_020 Hb_001279_020 Hb_007594_080--Hb_001279_020 Hb_010620_050 Hb_010620_050 Hb_007594_080--Hb_010620_050 Hb_007594_080--Hb_001663_130 Hb_000302_190 Hb_000302_190 Hb_007594_080--Hb_000302_190 Hb_000529_130 Hb_000529_130 Hb_007594_080--Hb_000529_130 Hb_001689_050 Hb_001689_050 Hb_007594_080--Hb_001689_050 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001160_110--Hb_001663_130 Hb_000032_410 Hb_000032_410 Hb_001160_110--Hb_000032_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87807 4.70273 13.4105 6.94919 2.65628 3.62017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40312 2.33799 1.07985 2.10422 7.32526

CAGE analysis