Hb_002151_010

Information

Type -
Description -
Location Contig2151: 22722-24434
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14610g
description hypothetical protein
nr
ID XP_006381644.1
description hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
swissprot
ID Q570U6
description Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
trembl
ID B9MSX7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22244: 22481-24347 , PASA_asmbl_22245: 23469-23753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002151_010 0.0 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
2 Hb_004158_050 0.1210158435 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
3 Hb_000120_350 0.1306284079 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
4 Hb_002900_150 0.1352249961 - - PREDICTED: syntaxin-81 [Jatropha curcas]
5 Hb_004324_210 0.1383742153 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_004907_090 0.1383964003 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000984_220 0.142161645 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_005656_070 0.1483860841 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_018133_100 0.1493494673 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001328_050 0.1519307927 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
11 Hb_000749_200 0.1548725772 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Jatropha curcas]
12 Hb_007594_080 0.1553668686 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_002026_090 0.1566697834 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
14 Hb_008494_030 0.1601179977 - - catalytic, putative [Ricinus communis]
15 Hb_000211_040 0.1613562738 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
16 Hb_011609_010 0.1616085318 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
17 Hb_002249_040 0.1629487983 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
18 Hb_000968_060 0.1631445008 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_001160_110 0.1636529123 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
20 Hb_001250_040 0.1641968113 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]

Gene co-expression network

sample Hb_002151_010 Hb_002151_010 Hb_004158_050 Hb_004158_050 Hb_002151_010--Hb_004158_050 Hb_000120_350 Hb_000120_350 Hb_002151_010--Hb_000120_350 Hb_002900_150 Hb_002900_150 Hb_002151_010--Hb_002900_150 Hb_004324_210 Hb_004324_210 Hb_002151_010--Hb_004324_210 Hb_004907_090 Hb_004907_090 Hb_002151_010--Hb_004907_090 Hb_000984_220 Hb_000984_220 Hb_002151_010--Hb_000984_220 Hb_002026_090 Hb_002026_090 Hb_004158_050--Hb_002026_090 Hb_000327_330 Hb_000327_330 Hb_004158_050--Hb_000327_330 Hb_001623_490 Hb_001623_490 Hb_004158_050--Hb_001623_490 Hb_003687_080 Hb_003687_080 Hb_004158_050--Hb_003687_080 Hb_007594_080 Hb_007594_080 Hb_004158_050--Hb_007594_080 Hb_001160_110 Hb_001160_110 Hb_004158_050--Hb_001160_110 Hb_000959_190 Hb_000959_190 Hb_000120_350--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_000120_350--Hb_001123_110 Hb_000123_140 Hb_000123_140 Hb_000120_350--Hb_000123_140 Hb_006935_040 Hb_006935_040 Hb_000120_350--Hb_006935_040 Hb_000300_710 Hb_000300_710 Hb_000120_350--Hb_000300_710 Hb_000968_060 Hb_000968_060 Hb_002900_150--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002900_150--Hb_000866_070 Hb_002488_010 Hb_002488_010 Hb_002900_150--Hb_002488_010 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110 Hb_004324_210--Hb_007594_080 Hb_001250_040 Hb_001250_040 Hb_004324_210--Hb_001250_040 Hb_004324_210--Hb_004907_090 Hb_000042_110 Hb_000042_110 Hb_004324_210--Hb_000042_110 Hb_007576_070 Hb_007576_070 Hb_004324_210--Hb_007576_070 Hb_008494_030 Hb_008494_030 Hb_004324_210--Hb_008494_030 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_000984_220--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_000984_220--Hb_001160_110 Hb_000984_220--Hb_003687_080 Hb_000984_220--Hb_004158_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.14475 9.45509 37.214 20.3268 9.54415 10.408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39384 3.50413 1.15597 2.19281 13.4515

CAGE analysis