Hb_000959_190

Information

Type -
Description -
Location Contig959: 164124-174100
Sequence    

Annotation

kegg
ID pmum:103342766
description crossover junction endonuclease EME1B-like
nr
ID XP_012075277.1
description PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
swissprot
ID C5H8J1
description Crossover junction endonuclease EME1B OS=Arabidopsis thaliana GN=EME1B PE=1 SV=1
trembl
ID A0A067KSP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09449 PE=4 SV=1
Gene Ontology
ID GO:0003677
description crossover junction endonuclease eme1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63647: 163974-167594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_190 0.0 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
2 Hb_000732_030 0.1089973228 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001123_110 0.1141449069 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000120_350 0.1164640786 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
5 Hb_000008_390 0.1187663927 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_000640_050 0.1191647324 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
7 Hb_004957_020 0.1197505214 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000123_140 0.1234706845 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
9 Hb_014231_020 0.1285561331 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_001135_110 0.1338928547 - - -
11 Hb_000703_160 0.1352814187 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
12 Hb_001863_160 0.1378716268 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_002600_130 0.1390969641 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
14 Hb_003874_010 0.1408356165 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
15 Hb_002498_240 0.1408999292 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
16 Hb_000563_440 0.1423865802 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
17 Hb_003430_040 0.1426210147 - - spermidine synthase 1, putative [Ricinus communis]
18 Hb_012787_030 0.1439089547 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_000890_020 0.1461729947 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_000363_350 0.1476393964 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000959_190 Hb_000959_190 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_001123_110 Hb_001123_110 Hb_000959_190--Hb_001123_110 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_002498_240 Hb_002498_240 Hb_001123_110--Hb_002498_240 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001160_110 Hb_001160_110 Hb_001123_110--Hb_001160_110 Hb_000120_350--Hb_001123_110 Hb_002151_010 Hb_002151_010 Hb_000120_350--Hb_002151_010 Hb_000123_140 Hb_000123_140 Hb_000120_350--Hb_000123_140 Hb_006935_040 Hb_006935_040 Hb_000120_350--Hb_006935_040 Hb_000300_710 Hb_000300_710 Hb_000120_350--Hb_000300_710 Hb_000086_180 Hb_000086_180 Hb_000008_390--Hb_000086_180 Hb_011609_010 Hb_011609_010 Hb_000008_390--Hb_011609_010 Hb_000803_090 Hb_000803_090 Hb_000008_390--Hb_000803_090 Hb_000008_390--Hb_006935_040 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_021495_010 Hb_021495_010 Hb_000640_050--Hb_021495_010 Hb_010998_050 Hb_010998_050 Hb_000640_050--Hb_010998_050 Hb_000640_050--Hb_004957_020 Hb_005901_030 Hb_005901_030 Hb_000640_050--Hb_005901_030 Hb_003874_010 Hb_003874_010 Hb_000640_050--Hb_003874_010 Hb_004957_020--Hb_005901_030 Hb_004957_020--Hb_003430_040 Hb_004957_020--Hb_003874_010 Hb_000211_100 Hb_000211_100 Hb_004957_020--Hb_000211_100 Hb_000345_290 Hb_000345_290 Hb_004957_020--Hb_000345_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5628 2.91707 11.1611 4.55937 1.56416 1.28809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20372 1.21472 0.583374 1.34517 1.42981

CAGE analysis