Hb_003529_180

Information

Type -
Description -
Location Contig3529: 175170-185300
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09880g
description hypothetical protein
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36659: 175428-176071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_180 0.0 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_002600_130 0.0895836959 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
3 Hb_000732_030 0.1143360664 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011609_010 0.1229525509 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
5 Hb_004725_030 0.1341155268 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
6 Hb_000009_220 0.1403934203 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
7 Hb_000189_390 0.1418569779 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
8 Hb_000803_090 0.1422644731 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
9 Hb_074792_010 0.1434184926 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
10 Hb_124951_010 0.1454361706 - - chitinase-like protein [Hevea brasiliensis]
11 Hb_000959_190 0.1483688624 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
12 Hb_012787_030 0.1499122782 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
13 Hb_003747_050 0.1500376626 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
14 Hb_003038_250 0.1576605997 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
15 Hb_013405_150 0.1595351403 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
16 Hb_000890_010 0.1598463459 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000008_390 0.1611767897 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
18 Hb_000684_100 0.1624493222 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
19 Hb_004957_020 0.1628582636 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001214_190 0.1634305566 - - hypothetical protein JCGZ_25001 [Jatropha curcas]

Gene co-expression network

sample Hb_003529_180 Hb_003529_180 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_011609_010 Hb_011609_010 Hb_003529_180--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_000189_390 Hb_000189_390 Hb_003529_180--Hb_000189_390 Hb_124951_010 Hb_124951_010 Hb_002600_130--Hb_124951_010 Hb_003747_050 Hb_003747_050 Hb_002600_130--Hb_003747_050 Hb_002600_130--Hb_000009_220 Hb_002600_130--Hb_011609_010 Hb_002600_130--Hb_004725_030 Hb_000959_190 Hb_000959_190 Hb_000732_030--Hb_000959_190 Hb_003430_040 Hb_003430_040 Hb_000732_030--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000732_030--Hb_074792_010 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000032_200 Hb_000032_200 Hb_000732_030--Hb_000032_200 Hb_000803_090 Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_005656_080 Hb_005656_080 Hb_004725_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_004725_030--Hb_000077_120 Hb_004725_030--Hb_001621_110 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000086_430 Hb_000086_430 Hb_000009_220--Hb_000086_430 Hb_076233_030 Hb_076233_030 Hb_000189_390--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_000189_390--Hb_014497_030 Hb_000189_390--Hb_000803_090 Hb_000189_390--Hb_011609_010 Hb_000189_390--Hb_124951_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.075632 0.104546 0.300584 0.0809978 0.0580866 0.0479788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191755 0.0150886 0.0287177 0.0179855 0.0320155

CAGE analysis