Hb_002600_130

Information

Type -
Description -
Location Contig2600: 139820-145475
Sequence    

Annotation

kegg
ID pmum:103329696
description uncharacterized LOC103329696
nr
ID XP_012088139.1
description PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
swissprot
ID O04251
description BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=3 SV=3
trembl
ID A0A067JWH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25651 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein brct domain-containing isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27102: 139910-142114 , PASA_asmbl_27103: 144020-145445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002600_130 0.0 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
2 Hb_003529_180 0.0895836959 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
3 Hb_124951_010 0.1071727138 - - chitinase-like protein [Hevea brasiliensis]
4 Hb_003747_050 0.121302226 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
5 Hb_000009_220 0.124525722 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
6 Hb_011609_010 0.1302548951 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
7 Hb_004725_030 0.1320618276 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
8 Hb_000062_360 0.1337252482 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
9 Hb_000684_100 0.1352527104 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
10 Hb_000959_190 0.1390969641 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
11 Hb_000803_090 0.1391685773 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
12 Hb_004267_060 0.1399010281 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_011915_040 0.1402548094 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
14 Hb_000890_010 0.1404726015 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001621_110 0.1426780291 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
16 Hb_000732_030 0.1435261351 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000139_220 0.1451541522 - - leucine rich repeat-containing protein, putative [Ricinus communis]
18 Hb_156635_020 0.1471855944 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
19 Hb_004957_020 0.1490867288 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000692_210 0.1491366236 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002600_130 Hb_002600_130 Hb_003529_180 Hb_003529_180 Hb_002600_130--Hb_003529_180 Hb_124951_010 Hb_124951_010 Hb_002600_130--Hb_124951_010 Hb_003747_050 Hb_003747_050 Hb_002600_130--Hb_003747_050 Hb_000009_220 Hb_000009_220 Hb_002600_130--Hb_000009_220 Hb_011609_010 Hb_011609_010 Hb_002600_130--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_002600_130--Hb_004725_030 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_003529_180--Hb_011609_010 Hb_003529_180--Hb_004725_030 Hb_003529_180--Hb_000009_220 Hb_000189_390 Hb_000189_390 Hb_003529_180--Hb_000189_390 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_000076_100 Hb_000076_100 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_000803_090 Hb_000803_090 Hb_003747_050--Hb_000803_090 Hb_011671_110 Hb_011671_110 Hb_003747_050--Hb_011671_110 Hb_047442_010 Hb_047442_010 Hb_003747_050--Hb_047442_010 Hb_012787_030 Hb_012787_030 Hb_003747_050--Hb_012787_030 Hb_003747_050--Hb_000317_190 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000086_430 Hb_000086_430 Hb_000009_220--Hb_000086_430 Hb_011609_010--Hb_000803_090 Hb_001624_040 Hb_001624_040 Hb_011609_010--Hb_001624_040 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_000139_220 Hb_000139_220 Hb_004725_030--Hb_000139_220 Hb_005656_080 Hb_005656_080 Hb_004725_030--Hb_005656_080 Hb_000077_120 Hb_000077_120 Hb_004725_030--Hb_000077_120 Hb_004725_030--Hb_001621_110 Hb_013405_150 Hb_013405_150 Hb_004725_030--Hb_013405_150 Hb_026234_010 Hb_026234_010 Hb_004725_030--Hb_026234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15662 1.9779 4.64504 1.31811 0.824625 0.875133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.33856 0.382942 0.411072 0.708384 0.352451

CAGE analysis