Hb_124951_010

Information

Type -
Description -
Location Contig124951: 295-2857
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18870g
description POPTRDRAFT_831333; chitinase family protein
nr
ID AHF88837.1
description chitinase-like protein [Hevea brasiliensis]
swissprot
ID Q09023
description Endochitinase CH25 OS=Brassica napus PE=2 SV=1
trembl
ID W0IWL0
description Chitinase-like protein OS=Hevea brasiliensis GN=chi-L2 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07583: 1387-2911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124951_010 0.0 - - chitinase-like protein [Hevea brasiliensis]
2 Hb_002600_130 0.1071727138 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
3 Hb_000317_190 0.1078667339 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
4 Hb_000076_100 0.111528184 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
5 Hb_163968_010 0.1369499522 - - vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_001214_190 0.1382417553 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
7 Hb_000134_030 0.1386182101 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
8 Hb_013016_010 0.1399980713 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000185_230 0.1434393707 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_003529_180 0.1454361706 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
11 Hb_003747_050 0.1465386995 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
12 Hb_000189_390 0.1475667734 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
13 Hb_015026_020 0.1496598221 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
14 Hb_010368_080 0.1524626778 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
15 Hb_000684_100 0.1528627253 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
16 Hb_000803_090 0.1548177348 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
17 Hb_047442_010 0.1575006322 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
18 Hb_011609_010 0.15973485 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
19 Hb_005394_010 0.1601415834 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
20 Hb_074792_010 0.1618327074 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]

Gene co-expression network

sample Hb_124951_010 Hb_124951_010 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_000317_190 Hb_000317_190 Hb_124951_010--Hb_000317_190 Hb_000076_100 Hb_000076_100 Hb_124951_010--Hb_000076_100 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_003529_180 Hb_003529_180 Hb_002600_130--Hb_003529_180 Hb_003747_050 Hb_003747_050 Hb_002600_130--Hb_003747_050 Hb_000009_220 Hb_000009_220 Hb_002600_130--Hb_000009_220 Hb_011609_010 Hb_011609_010 Hb_002600_130--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_002600_130--Hb_004725_030 Hb_005941_020 Hb_005941_020 Hb_000317_190--Hb_005941_020 Hb_047442_010 Hb_047442_010 Hb_000317_190--Hb_047442_010 Hb_001894_160 Hb_001894_160 Hb_000317_190--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_000317_190--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000317_190--Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_010368_080 Hb_010368_080 Hb_000076_100--Hb_010368_080 Hb_000109_130 Hb_000109_130 Hb_000076_100--Hb_000109_130 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000076_100--Hb_000317_190 Hb_004837_220 Hb_004837_220 Hb_163968_010--Hb_004837_220 Hb_163968_010--Hb_002600_130 Hb_163968_010--Hb_000134_030 Hb_163968_010--Hb_000076_100 Hb_004267_060 Hb_004267_060 Hb_163968_010--Hb_004267_060 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_003430_040 Hb_003430_040 Hb_001214_190--Hb_003430_040 Hb_143813_020 Hb_143813_020 Hb_001214_190--Hb_143813_020 Hb_001214_190--Hb_000684_100 Hb_008173_060 Hb_008173_060 Hb_000134_030--Hb_008173_060 Hb_002400_050 Hb_002400_050 Hb_000134_030--Hb_002400_050 Hb_002518_200 Hb_002518_200 Hb_000134_030--Hb_002518_200 Hb_000260_610 Hb_000260_610 Hb_000134_030--Hb_000260_610 Hb_000890_020 Hb_000890_020 Hb_000134_030--Hb_000890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3928 38.1436 95.3924 16.1755 10.0247 15.0411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75675 6.29092 5.79038 12.4202 6.86944

CAGE analysis