Hb_000890_020

Information

Type -
Description -
Location Contig890: 8340-19155
Sequence    

Annotation

kegg
ID rcu:RCOM_0680420
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002516897.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9RT28
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_0680420 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61578: 8582-9933
cDNA
(Sanger)
(ID:Location)		 007_E04.ab1: 9210-10178 , 029_F10.ab1: 9380-10178 , 043_K03.ab1: 9249-10178

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_020 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_004920_050 0.1257861888 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
3 Hb_002400_050 0.1266372035 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
4 Hb_002540_070 0.1328677815 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
5 Hb_000086_180 0.1337074619 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
6 Hb_000008_390 0.1365970556 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
7 Hb_000181_270 0.1381134204 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002518_200 0.1408492361 - - Proliferating cell nuclear antigen [Theobroma cacao]
9 Hb_002463_050 0.1413220487 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001141_050 0.1417144976 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
11 Hb_086639_050 0.1438993199 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000959_190 0.1461729947 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
13 Hb_001117_080 0.1478500865 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
14 Hb_000015_150 0.1493458769 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
15 Hb_000260_610 0.1504145896 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
16 Hb_007545_110 0.151222633 - - catalytic, putative [Ricinus communis]
17 Hb_001488_290 0.1512251828 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_000134_030 0.1518700235 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
19 Hb_007123_080 0.1536560561 - - big map kinase/bmk, putative [Ricinus communis]
20 Hb_004957_020 0.1573486407 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000890_020 Hb_000890_020 Hb_004920_050 Hb_004920_050 Hb_000890_020--Hb_004920_050 Hb_002400_050 Hb_002400_050 Hb_000890_020--Hb_002400_050 Hb_002540_070 Hb_002540_070 Hb_000890_020--Hb_002540_070 Hb_000086_180 Hb_000086_180 Hb_000890_020--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000890_020--Hb_000008_390 Hb_000181_270 Hb_000181_270 Hb_000890_020--Hb_000181_270 Hb_004920_050--Hb_000181_270 Hb_011485_030 Hb_011485_030 Hb_004920_050--Hb_011485_030 Hb_000077_110 Hb_000077_110 Hb_004920_050--Hb_000077_110 Hb_002518_200 Hb_002518_200 Hb_004920_050--Hb_002518_200 Hb_000566_130 Hb_000566_130 Hb_004920_050--Hb_000566_130 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_002400_050--Hb_000260_610 Hb_007545_110 Hb_007545_110 Hb_002400_050--Hb_007545_110 Hb_002400_050--Hb_002518_200 Hb_002400_050--Hb_000181_270 Hb_007123_080 Hb_007123_080 Hb_002540_070--Hb_007123_080 Hb_000563_440 Hb_000563_440 Hb_002540_070--Hb_000563_440 Hb_002235_380 Hb_002235_380 Hb_002540_070--Hb_002235_380 Hb_002540_070--Hb_000181_270 Hb_002540_070--Hb_002400_050 Hb_000086_180--Hb_000008_390 Hb_001488_290 Hb_001488_290 Hb_000086_180--Hb_001488_290 Hb_001160_110 Hb_001160_110 Hb_000086_180--Hb_001160_110 Hb_000032_410 Hb_000032_410 Hb_000086_180--Hb_000032_410 Hb_001663_130 Hb_001663_130 Hb_000086_180--Hb_001663_130 Hb_000649_330 Hb_000649_330 Hb_000086_180--Hb_000649_330 Hb_011609_010 Hb_011609_010 Hb_000008_390--Hb_011609_010 Hb_000803_090 Hb_000803_090 Hb_000008_390--Hb_000803_090 Hb_006935_040 Hb_006935_040 Hb_000008_390--Hb_006935_040 Hb_000959_190 Hb_000959_190 Hb_000008_390--Hb_000959_190 Hb_001021_100 Hb_001021_100 Hb_000008_390--Hb_001021_100 Hb_000181_270--Hb_011485_030 Hb_000288_090 Hb_000288_090 Hb_000181_270--Hb_000288_090 Hb_000181_270--Hb_002518_200 Hb_000529_040 Hb_000529_040 Hb_000181_270--Hb_000529_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.987696 6.06221 24.3042 10.7334 1.7099 3.16449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06827 1.22244 1.05138 4.67821 3.67138

CAGE analysis