Hb_000563_440

Information

Type -
Description -
Location Contig563: 330292-334371
Sequence    

Annotation

kegg
ID rcu:RCOM_0682050
description hypothetical protein
nr
ID XP_012083980.1
description PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
swissprot
ID Q9LUR0
description Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2 PE=2 SV=1
trembl
ID A0A067JVC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18912 PE=4 SV=1
Gene Ontology
ID GO:2001022
description condensin-2 complex subunit h2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48925: 330204-331977 , PASA_asmbl_48926: 331992-332613 , PASA_asmbl_48927: 333127-334405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_440 0.0 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
2 Hb_002540_070 0.1233955123 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
3 Hb_000684_120 0.124074519 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
4 Hb_002235_380 0.1321746433 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
5 Hb_004155_020 0.1335246435 transcription factor TF Family: MYB myb, putative [Ricinus communis]
6 Hb_005271_140 0.1408478404 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
7 Hb_001863_160 0.1417060778 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
8 Hb_000959_190 0.1423865802 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
9 Hb_089140_090 0.143878288 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
10 Hb_004116_120 0.1505268436 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
11 Hb_030627_070 0.1511567922 - - histone H4 [Zea mays]
12 Hb_001114_170 0.1513238545 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002218_100 0.1517799765 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
14 Hb_000098_150 0.1526901446 - - DNA helicase hus2, putative [Ricinus communis]
15 Hb_002045_190 0.1550075569 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
16 Hb_001155_050 0.1552224675 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
17 Hb_033594_040 0.1554749702 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
18 Hb_000640_050 0.1573599814 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
19 Hb_001123_110 0.1581561877 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007123_080 0.1604752493 - - big map kinase/bmk, putative [Ricinus communis]

Gene co-expression network

sample Hb_000563_440 Hb_000563_440 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_007123_080 Hb_007123_080 Hb_002540_070--Hb_007123_080 Hb_000890_020 Hb_000890_020 Hb_002540_070--Hb_000890_020 Hb_002540_070--Hb_002235_380 Hb_000181_270 Hb_000181_270 Hb_002540_070--Hb_000181_270 Hb_002400_050 Hb_002400_050 Hb_002540_070--Hb_002400_050 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_002235_380--Hb_000684_120 Hb_002960_090 Hb_002960_090 Hb_002235_380--Hb_002960_090 Hb_002235_380--Hb_001863_160 Hb_001155_050 Hb_001155_050 Hb_002235_380--Hb_001155_050 Hb_004155_020--Hb_001232_090 Hb_005901_030 Hb_005901_030 Hb_004155_020--Hb_005901_030 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_000260_650 Hb_000260_650 Hb_004155_020--Hb_000260_650 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_006970_130 Hb_006970_130 Hb_005271_140--Hb_006970_130 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_014231_020 Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461056 0.752337 4.48853 1.67808 0.1985 0.173195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.490247 0.864098 0.264188 0.680647 0.52358

CAGE analysis