Hb_000260_650

Information

Type -
Description -
Location Contig260: 471382-474692
Sequence    

Annotation

kegg
ID rcu:RCOM_1324410
description hypothetical protein
nr
ID XP_012090935.1
description PREDICTED: protein PFC0760c [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD74
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00578 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27041: 469840-470528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_650 0.0 - - PREDICTED: protein PFC0760c [Jatropha curcas]
2 Hb_000960_090 0.1114322158 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005901_030 0.1286517852 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
4 Hb_004155_020 0.1311220476 transcription factor TF Family: MYB myb, putative [Ricinus communis]
5 Hb_000288_090 0.1355730438 - - unnamed protein product [Vitis vinifera]
6 Hb_000668_060 0.1511768388 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
7 Hb_006970_130 0.1628197236 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
8 Hb_000345_410 0.1639019177 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
9 Hb_025214_120 0.1660810713 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
10 Hb_011828_040 0.1677313928 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
11 Hb_000566_130 0.1728656052 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
12 Hb_004920_050 0.1741622138 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
13 Hb_010812_070 0.1746116651 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_005162_130 0.1746969083 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
15 Hb_002007_280 0.1751132924 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
16 Hb_005271_140 0.1798464144 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
17 Hb_010998_050 0.1815235881 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
18 Hb_000563_440 0.1826533906 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
19 Hb_001232_090 0.1843546813 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
20 Hb_000526_010 0.1847637991 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000260_650 Hb_000260_650 Hb_000960_090 Hb_000960_090 Hb_000260_650--Hb_000960_090 Hb_005901_030 Hb_005901_030 Hb_000260_650--Hb_005901_030 Hb_004155_020 Hb_004155_020 Hb_000260_650--Hb_004155_020 Hb_000288_090 Hb_000288_090 Hb_000260_650--Hb_000288_090 Hb_000668_060 Hb_000668_060 Hb_000260_650--Hb_000668_060 Hb_006970_130 Hb_006970_130 Hb_000260_650--Hb_006970_130 Hb_000566_130 Hb_000566_130 Hb_000960_090--Hb_000566_130 Hb_000960_090--Hb_000288_090 Hb_000077_110 Hb_000077_110 Hb_000960_090--Hb_000077_110 Hb_000960_090--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000960_090--Hb_093458_020 Hb_004957_020 Hb_004957_020 Hb_005901_030--Hb_004957_020 Hb_005901_030--Hb_004155_020 Hb_000211_100 Hb_000211_100 Hb_005901_030--Hb_000211_100 Hb_021495_010 Hb_021495_010 Hb_005901_030--Hb_021495_010 Hb_000640_050 Hb_000640_050 Hb_005901_030--Hb_000640_050 Hb_001232_090 Hb_001232_090 Hb_004155_020--Hb_001232_090 Hb_000526_010 Hb_000526_010 Hb_004155_020--Hb_000526_010 Hb_143813_020 Hb_143813_020 Hb_004155_020--Hb_143813_020 Hb_000563_440 Hb_000563_440 Hb_004155_020--Hb_000563_440 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050 Hb_000035_080 Hb_000035_080 Hb_000668_060--Hb_000035_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_074399_010 Hb_074399_010 Hb_000668_060--Hb_074399_010 Hb_000940_210 Hb_000940_210 Hb_000668_060--Hb_000940_210 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_004968_040 Hb_004968_040 Hb_006970_130--Hb_004968_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.641092 0.28028 3.25483 1.99783 0.182191 0.204646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.251175 0.239998 0.376675 0.689625 0.179993

CAGE analysis