Hb_000940_210

Information

Type -
Description -
Location Contig940: 286637-287155
Sequence    

Annotation

kegg
ID cic:CICLE_v10029386mg
description hypothetical protein
nr
ID ADV04050.1
description cyclophilin [Hevea brasiliensis]
swissprot
ID Q39613
description Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=1 SV=1
trembl
ID F8RW92
description Peptidyl-prolyl cis-trans isomerase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003755
description cyclophilin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63155: 286567-287587
cDNA
(Sanger)
(ID:Location)		 005_P14.ab1: 286569-287275 , 015_E24.ab1: 286569-287277 , 017_C06.ab1: 286569-287223 , 034_O10.ab1: 286567-287194 , 052_M20.ab1: 286567-287190

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_210 0.0 - - cyclophilin [Hevea brasiliensis]
2 Hb_172706_020 0.0955535269 - - PREDICTED: protein ABIL2 [Jatropha curcas]
3 Hb_002374_270 0.1084636954 - - conserved hypothetical protein [Ricinus communis]
4 Hb_124677_030 0.1111048491 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
5 Hb_000581_030 0.1121275247 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003430_080 0.1123781277 - - zinc finger protein, putative [Ricinus communis]
7 Hb_001053_210 0.1148544891 - - -
8 Hb_000003_030 0.1149537463 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_018845_010 0.1151918553 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
10 Hb_003740_020 0.1158385456 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_004218_130 0.1196592111 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
12 Hb_000753_160 0.1205290508 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
13 Hb_000740_090 0.124688404 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002518_090 0.1300034662 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
15 Hb_000220_110 0.1311131447 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
16 Hb_003964_080 0.1312103008 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
17 Hb_034507_060 0.1335885243 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
18 Hb_023226_030 0.1355700348 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
19 Hb_000116_560 0.1362951282 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_002235_060 0.1364199613 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000940_210 Hb_000940_210 Hb_172706_020 Hb_172706_020 Hb_000940_210--Hb_172706_020 Hb_002374_270 Hb_002374_270 Hb_000940_210--Hb_002374_270 Hb_124677_030 Hb_124677_030 Hb_000940_210--Hb_124677_030 Hb_000581_030 Hb_000581_030 Hb_000940_210--Hb_000581_030 Hb_003430_080 Hb_003430_080 Hb_000940_210--Hb_003430_080 Hb_001053_210 Hb_001053_210 Hb_000940_210--Hb_001053_210 Hb_023226_030 Hb_023226_030 Hb_172706_020--Hb_023226_030 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_034507_060 Hb_034507_060 Hb_172706_020--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_172706_020--Hb_004218_130 Hb_000309_030 Hb_000309_030 Hb_172706_020--Hb_000309_030 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110 Hb_188281_030 Hb_188281_030 Hb_124677_030--Hb_188281_030 Hb_000345_460 Hb_000345_460 Hb_124677_030--Hb_000345_460 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_000581_030--Hb_019654_060 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_001053_210--Hb_000740_090 Hb_001053_210--Hb_003430_080 Hb_001053_210--Hb_023226_030 Hb_147245_010 Hb_147245_010 Hb_001053_210--Hb_147245_010 Hb_011457_130 Hb_011457_130 Hb_001053_210--Hb_011457_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.577 249.66 682.634 825.197 82.6674 80.8033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.662 182.818 72.16 397.62 202.565

CAGE analysis