Hb_004968_040

Information

Type -
Description -
Location Contig4968: 58320-61121
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20330g
description POPTRDRAFT_659599; hypothetical protein
nr
ID XP_012088303.1
description PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
swissprot
ID F4K295
description Rop guanine nucleotide exchange factor 5 OS=Arabidopsis thaliana GN=ROPGEF5 PE=2 SV=1
trembl
ID A0A067L8Y1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01357 PE=4 SV=1
Gene Ontology
ID GO:0005089
description rop guanine nucleotide exchange factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45502: 58005-58130 , PASA_asmbl_45504: 60206-60817
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004968_040 0.0 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
2 Hb_000003_060 0.1145387391 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
3 Hb_000077_110 0.1218275983 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
4 Hb_093458_020 0.1234325453 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
5 Hb_002284_260 0.1297714363 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
6 Hb_006970_130 0.1299613566 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
7 Hb_010436_080 0.1304151225 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
8 Hb_004007_130 0.1370115792 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
9 Hb_000190_220 0.1416335395 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
10 Hb_002871_130 0.1479295985 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
11 Hb_003580_010 0.1495331133 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
12 Hb_004531_080 0.1514725684 - - hypothetical protein RCOM_1491960 [Ricinus communis]
13 Hb_002311_090 0.151844609 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
14 Hb_000288_090 0.15574048 - - unnamed protein product [Vitis vinifera]
15 Hb_124677_050 0.1584229854 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000566_130 0.158689003 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
17 Hb_001510_040 0.1597463136 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
18 Hb_004129_060 0.1605904396 - - triacylglycerol lipase, putative [Ricinus communis]
19 Hb_005271_140 0.1609909916 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
20 Hb_001322_160 0.1614993635 - - hypothetical protein JCGZ_03472 [Jatropha curcas]

Gene co-expression network

sample Hb_004968_040 Hb_004968_040 Hb_000003_060 Hb_000003_060 Hb_004968_040--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_004968_040--Hb_000077_110 Hb_093458_020 Hb_093458_020 Hb_004968_040--Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_004968_040--Hb_002284_260 Hb_006970_130 Hb_006970_130 Hb_004968_040--Hb_006970_130 Hb_010436_080 Hb_010436_080 Hb_004968_040--Hb_010436_080 Hb_000003_060--Hb_093458_020 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_000003_060--Hb_010436_080 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_000483_080 Hb_000483_080 Hb_000077_110--Hb_000483_080 Hb_000307_220 Hb_000307_220 Hb_000077_110--Hb_000307_220 Hb_000566_130 Hb_000566_130 Hb_000077_110--Hb_000566_130 Hb_000077_110--Hb_093458_020 Hb_004920_050 Hb_004920_050 Hb_000077_110--Hb_004920_050 Hb_000077_110--Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_124677_050 Hb_124677_050 Hb_002284_260--Hb_124677_050 Hb_004007_130 Hb_004007_130 Hb_002284_260--Hb_004007_130 Hb_002284_260--Hb_002871_130 Hb_003360_010 Hb_003360_010 Hb_002284_260--Hb_003360_010 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_006970_130--Hb_000288_090 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_010436_080--Hb_000190_220 Hb_002078_230 Hb_002078_230 Hb_010436_080--Hb_002078_230 Hb_009339_040 Hb_009339_040 Hb_010436_080--Hb_009339_040 Hb_010436_080--Hb_006970_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305631 0.276851 5.07434 3.43717 0.16751 0.189403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.423086 0.215396 0 1.22417 0.536512

CAGE analysis