Hb_000057_190

Information

Type -
Description -
Location Contig57: 248024-250836
Sequence    

Annotation

kegg
ID rcu:RCOM_1494740
description hypothetical protein
nr
ID XP_002516070.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID B9RQQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49308: 247859-247958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000003_060 0.1319838296 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
3 Hb_000563_180 0.1798831746 - - PREDICTED: J protein JJJ2 [Jatropha curcas]
4 Hb_001780_080 0.1862784007 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
5 Hb_010436_080 0.1933663805 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
6 Hb_093458_020 0.1935344525 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
7 Hb_001080_050 0.1973627796 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
8 Hb_001328_070 0.1992781098 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
9 Hb_000288_090 0.2026954799 - - unnamed protein product [Vitis vinifera]
10 Hb_000365_210 0.2044004164 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
11 Hb_005116_030 0.2047532037 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
12 Hb_000958_040 0.2059511495 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
13 Hb_006152_040 0.2084237645 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
14 Hb_000172_090 0.21137204 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
15 Hb_020301_020 0.2124713121 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_007632_210 0.2147585797 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
17 Hb_124677_050 0.2168071625 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006970_130 0.2193188921 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
19 Hb_000663_070 0.2219088994 - - cyclin A, putative [Ricinus communis]
20 Hb_004968_040 0.2247496621 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000057_190 Hb_000057_190 Hb_000003_060 Hb_000003_060 Hb_000057_190--Hb_000003_060 Hb_000563_180 Hb_000563_180 Hb_000057_190--Hb_000563_180 Hb_001780_080 Hb_001780_080 Hb_000057_190--Hb_001780_080 Hb_010436_080 Hb_010436_080 Hb_000057_190--Hb_010436_080 Hb_093458_020 Hb_093458_020 Hb_000057_190--Hb_093458_020 Hb_001080_050 Hb_001080_050 Hb_000057_190--Hb_001080_050 Hb_000003_060--Hb_093458_020 Hb_004968_040 Hb_004968_040 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_001754_100 Hb_001754_100 Hb_000563_180--Hb_001754_100 Hb_001005_170 Hb_001005_170 Hb_000563_180--Hb_001005_170 Hb_002874_010 Hb_002874_010 Hb_000563_180--Hb_002874_010 Hb_005306_030 Hb_005306_030 Hb_000563_180--Hb_005306_030 Hb_001862_160 Hb_001862_160 Hb_000563_180--Hb_001862_160 Hb_001366_380 Hb_001366_380 Hb_000563_180--Hb_001366_380 Hb_001478_020 Hb_001478_020 Hb_001780_080--Hb_001478_020 Hb_003784_040 Hb_003784_040 Hb_001780_080--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_000139_280 Hb_000139_280 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210 Hb_000190_220 Hb_000190_220 Hb_010436_080--Hb_000190_220 Hb_010436_080--Hb_004968_040 Hb_002078_230 Hb_002078_230 Hb_010436_080--Hb_002078_230 Hb_009339_040 Hb_009339_040 Hb_010436_080--Hb_009339_040 Hb_010436_080--Hb_006970_130 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_093458_020--Hb_004968_040 Hb_000934_150 Hb_000934_150 Hb_001080_050--Hb_000934_150 Hb_001080_050--Hb_093458_020 Hb_000307_220 Hb_000307_220 Hb_001080_050--Hb_000307_220 Hb_124677_030 Hb_124677_030 Hb_001080_050--Hb_124677_030 Hb_001080_050--Hb_000003_060 Hb_001080_050--Hb_000566_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129652 0.31435 5.5443 2.68923 0.0237071 0.0125377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317 0.566821 0.085415 1.7541 0

CAGE analysis