Hb_001080_050

Information

Type -
Description -
Location Contig1080: 15014-15744
Sequence    

Annotation

kegg
ID rcu:RCOM_1600960
description hypothetical protein
nr
ID XP_012073662.1
description PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02402: 3117-15758 , PASA_asmbl_02403: 14946-15758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_050 0.0 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
2 Hb_000934_150 0.1615964245 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
3 Hb_093458_020 0.1616694972 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
4 Hb_000307_220 0.1624119563 - - oxidoreductase family protein [Populus trichocarpa]
5 Hb_124677_030 0.167505523 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
6 Hb_000003_060 0.1695785505 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
7 Hb_000566_130 0.1730669053 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
8 Hb_000960_090 0.1738162909 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007002_040 0.1741817512 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
10 Hb_004774_030 0.1771469439 - - PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
11 Hb_000086_670 0.1877847682 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
12 Hb_006970_130 0.1886580708 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
13 Hb_000077_110 0.1907931907 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
14 Hb_002518_090 0.1929693768 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
15 Hb_028872_160 0.1955870208 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
16 Hb_000057_190 0.1973627796 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000237_020 0.1976728742 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
18 Hb_001322_160 0.2025358847 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
19 Hb_000940_210 0.2026681542 - - cyclophilin [Hevea brasiliensis]
20 Hb_003813_060 0.2035045031 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001080_050 Hb_001080_050 Hb_000934_150 Hb_000934_150 Hb_001080_050--Hb_000934_150 Hb_093458_020 Hb_093458_020 Hb_001080_050--Hb_093458_020 Hb_000307_220 Hb_000307_220 Hb_001080_050--Hb_000307_220 Hb_124677_030 Hb_124677_030 Hb_001080_050--Hb_124677_030 Hb_000003_060 Hb_000003_060 Hb_001080_050--Hb_000003_060 Hb_000566_130 Hb_000566_130 Hb_001080_050--Hb_000566_130 Hb_000934_150--Hb_000307_220 Hb_002518_090 Hb_002518_090 Hb_000934_150--Hb_002518_090 Hb_006970_130 Hb_006970_130 Hb_000934_150--Hb_006970_130 Hb_003580_010 Hb_003580_010 Hb_000934_150--Hb_003580_010 Hb_023226_030 Hb_023226_030 Hb_000934_150--Hb_023226_030 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_093458_020--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_000307_220--Hb_000077_110 Hb_000237_020 Hb_000237_020 Hb_000307_220--Hb_000237_020 Hb_000307_220--Hb_000566_130 Hb_172706_020 Hb_172706_020 Hb_000307_220--Hb_172706_020 Hb_000581_030 Hb_000581_030 Hb_000307_220--Hb_000581_030 Hb_000307_220--Hb_002518_090 Hb_188281_030 Hb_188281_030 Hb_124677_030--Hb_188281_030 Hb_000940_210 Hb_000940_210 Hb_124677_030--Hb_000940_210 Hb_000345_460 Hb_000345_460 Hb_124677_030--Hb_000345_460 Hb_001232_090 Hb_001232_090 Hb_124677_030--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_124677_030--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_124677_030--Hb_000684_120 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_000566_130--Hb_000077_110 Hb_004920_050 Hb_004920_050 Hb_000566_130--Hb_004920_050 Hb_000960_090 Hb_000960_090 Hb_000566_130--Hb_000960_090 Hb_000566_130--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.714268 1.67063 18.1127 16.5542 0.444537 1.46081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31986 3.64663 1.33439 9.79725 0.886224

CAGE analysis