Hb_003580_010

Information

Type -
Description -
Location Contig3580: 9170-11740
Sequence    

Annotation

kegg
ID rcu:RCOM_0549620
description Rho GDP-dissociation inhibitor, putative
nr
ID XP_002532283.1
description Rho GDP-dissociation inhibitor, putative [Ricinus communis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID B9T214
description Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0549620 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003580_010 0.0 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
2 Hb_004968_040 0.1495331133 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
3 Hb_006970_130 0.1557757351 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
4 Hb_000934_150 0.1568485384 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
5 Hb_001510_040 0.158048591 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
6 Hb_001823_090 0.1625915303 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005271_140 0.1652734962 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
8 Hb_004531_080 0.1719132841 - - hypothetical protein RCOM_1491960 [Ricinus communis]
9 Hb_000638_240 0.1745568391 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
10 Hb_003540_120 0.1745568991 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_000077_110 0.1749172749 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
12 Hb_004545_040 0.1765519774 - - PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
13 Hb_000260_380 0.1778957515 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
14 Hb_000320_310 0.1785285827 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
15 Hb_002871_130 0.1811612849 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
16 Hb_001268_160 0.1824003863 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
17 Hb_001123_310 0.1836938528 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_020805_040 0.1872093803 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
19 Hb_002284_260 0.1890258845 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
20 Hb_001619_100 0.1898771543 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]

Gene co-expression network

sample Hb_003580_010 Hb_003580_010 Hb_004968_040 Hb_004968_040 Hb_003580_010--Hb_004968_040 Hb_006970_130 Hb_006970_130 Hb_003580_010--Hb_006970_130 Hb_000934_150 Hb_000934_150 Hb_003580_010--Hb_000934_150 Hb_001510_040 Hb_001510_040 Hb_003580_010--Hb_001510_040 Hb_001823_090 Hb_001823_090 Hb_003580_010--Hb_001823_090 Hb_005271_140 Hb_005271_140 Hb_003580_010--Hb_005271_140 Hb_000003_060 Hb_000003_060 Hb_004968_040--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_004968_040--Hb_000077_110 Hb_093458_020 Hb_093458_020 Hb_004968_040--Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_006970_130 Hb_010436_080 Hb_010436_080 Hb_004968_040--Hb_010436_080 Hb_006970_130--Hb_005271_140 Hb_000288_090 Hb_000288_090 Hb_006970_130--Hb_000288_090 Hb_004007_130 Hb_004007_130 Hb_006970_130--Hb_004007_130 Hb_000190_220 Hb_000190_220 Hb_006970_130--Hb_000190_220 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080 Hb_000307_220 Hb_000307_220 Hb_000934_150--Hb_000307_220 Hb_002518_090 Hb_002518_090 Hb_000934_150--Hb_002518_090 Hb_000934_150--Hb_006970_130 Hb_023226_030 Hb_023226_030 Hb_000934_150--Hb_023226_030 Hb_001080_050 Hb_001080_050 Hb_000934_150--Hb_001080_050 Hb_001510_040--Hb_004968_040 Hb_004079_090 Hb_004079_090 Hb_001510_040--Hb_004079_090 Hb_001862_050 Hb_001862_050 Hb_001510_040--Hb_001862_050 Hb_118283_010 Hb_118283_010 Hb_001510_040--Hb_118283_010 Hb_003109_010 Hb_003109_010 Hb_001510_040--Hb_003109_010 Hb_000735_060 Hb_000735_060 Hb_001823_090--Hb_000735_060 Hb_001597_030 Hb_001597_030 Hb_001823_090--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_001823_090--Hb_003606_050 Hb_003540_120 Hb_003540_120 Hb_001823_090--Hb_003540_120 Hb_001863_010 Hb_001863_010 Hb_001823_090--Hb_001863_010 Hb_000834_220 Hb_000834_220 Hb_001823_090--Hb_000834_220 Hb_001232_090 Hb_001232_090 Hb_005271_140--Hb_001232_090 Hb_010534_020 Hb_010534_020 Hb_005271_140--Hb_010534_020 Hb_000684_120 Hb_000684_120 Hb_005271_140--Hb_000684_120 Hb_000757_130 Hb_000757_130 Hb_005271_140--Hb_000757_130 Hb_000563_440 Hb_000563_440 Hb_005271_140--Hb_000563_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25843 0.694481 6.80036 5.80821 0.0269848 0.394629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.432256 0.582705 0 1.90229 1.76586

CAGE analysis