Hb_004079_090

Information

Type -
Description -
Location Contig4079: 59790-61021
Sequence    

Annotation

kegg
ID rcu:RCOM_1053120
description hypothetical protein
nr
ID XP_002514319.1
description hypothetical protein RCOM_1053120 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKS5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1053120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40363: 60561-61222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004079_090 0.0 - - hypothetical protein RCOM_1053120 [Ricinus communis]
2 Hb_000020_040 0.1309160531 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
3 Hb_000002_430 0.1353496372 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
4 Hb_001755_040 0.1360261117 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
5 Hb_000936_030 0.1566852823 - - hypothetical protein RCOM_0615680 [Ricinus communis]
6 Hb_002232_310 0.1570232826 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
7 Hb_003935_090 0.161017664 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
8 Hb_004129_060 0.164150866 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_001510_040 0.1641545654 - - PREDICTED: 125 kDa kinesin-related protein [Jatropha curcas]
10 Hb_010705_040 0.1680527001 - - PREDICTED: kinesin-4 [Jatropha curcas]
11 Hb_000416_080 0.1707863836 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
12 Hb_002205_180 0.1736927365 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
13 Hb_059567_010 0.1783724555 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
14 Hb_002851_040 0.1789692702 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
15 Hb_011457_120 0.1799791896 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
16 Hb_003109_010 0.1800704014 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
17 Hb_000441_210 0.1815209991 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
18 Hb_008406_100 0.1822376411 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
19 Hb_011360_130 0.1826920079 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014497_070 0.1834111296 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_004079_090 Hb_004079_090 Hb_000020_040 Hb_000020_040 Hb_004079_090--Hb_000020_040 Hb_000002_430 Hb_000002_430 Hb_004079_090--Hb_000002_430 Hb_001755_040 Hb_001755_040 Hb_004079_090--Hb_001755_040 Hb_000936_030 Hb_000936_030 Hb_004079_090--Hb_000936_030 Hb_002232_310 Hb_002232_310 Hb_004079_090--Hb_002232_310 Hb_003935_090 Hb_003935_090 Hb_004079_090--Hb_003935_090 Hb_011457_120 Hb_011457_120 Hb_000020_040--Hb_011457_120 Hb_000020_040--Hb_001755_040 Hb_000020_040--Hb_002232_310 Hb_011360_130 Hb_011360_130 Hb_000020_040--Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_000020_040--Hb_014497_070 Hb_000416_080 Hb_000416_080 Hb_000002_430--Hb_000416_080 Hb_001864_040 Hb_001864_040 Hb_000002_430--Hb_001864_040 Hb_000265_100 Hb_000265_100 Hb_000002_430--Hb_000265_100 Hb_004635_020 Hb_004635_020 Hb_000002_430--Hb_004635_020 Hb_000002_430--Hb_003935_090 Hb_033152_060 Hb_033152_060 Hb_000002_430--Hb_033152_060 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_001755_040--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_001755_040--Hb_010705_040 Hb_004129_060 Hb_004129_060 Hb_000936_030--Hb_004129_060 Hb_000936_030--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000936_030--Hb_002205_180 Hb_000936_030--Hb_002232_310 Hb_004102_090 Hb_004102_090 Hb_000936_030--Hb_004102_090 Hb_002232_310--Hb_003935_090 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_002232_310--Hb_007574_020 Hb_003935_090--Hb_007574_020 Hb_003935_090--Hb_004109_100 Hb_012055_080 Hb_012055_080 Hb_003935_090--Hb_012055_080 Hb_023344_100 Hb_023344_100 Hb_003935_090--Hb_023344_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221681 0.0247368 2.58887 1.02749 0.0246917 0.0931345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564402 0.0443862 0 0.0715575 0.270635

CAGE analysis