Hb_012055_080

Information

Type -
Description -
Location Contig12055: 68020-70023
Sequence    

Annotation

kegg
ID rcu:RCOM_1155100
description copper ion binding protein, putative
nr
ID XP_012079351.1
description PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12493 PE=4 SV=1
Gene Ontology
ID GO:0005886
description lysine-rich arabinogalactan protein 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06406: 68026-70067
cDNA
(Sanger)
(ID:Location)		 008_N04.ab1: 68216-68404 , 016_C02.ab1: 69335-70065 , 019_N21.ab1: 68217-68403 , 021_G22.ab1: 69299-70060 , 030_O12.ab1: 69325-70065 , 033_J08.ab1: 69282-70065 , 037_M24.ab1: 69302-70065 , 046_F24.ab1: 69316-70067 , 052_A19.ab1: 69577-70060

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_080 0.0 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
2 Hb_003935_090 0.1168895985 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
3 Hb_007952_050 0.1240334677 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
4 Hb_011033_010 0.1329316674 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_007574_020 0.1329431644 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
6 Hb_004218_050 0.1351370933 - - annexin [Manihot esculenta]
7 Hb_000925_150 0.1391363866 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
8 Hb_012653_010 0.1481631114 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
9 Hb_004109_100 0.149563484 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
10 Hb_002232_310 0.1525098242 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
11 Hb_003109_010 0.1537347278 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_010683_070 0.15381399 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
13 Hb_004115_010 0.1561605774 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
14 Hb_024973_020 0.1578351349 - - Protein regulator of cytokinesis, putative [Ricinus communis]
15 Hb_003020_190 0.158551043 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
16 Hb_005568_140 0.1598474151 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000056_030 0.1622838628 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
18 Hb_018133_070 0.1650476314 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
19 Hb_002374_470 0.1651846099 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
20 Hb_002243_030 0.1655792569 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012055_080 Hb_012055_080 Hb_003935_090 Hb_003935_090 Hb_012055_080--Hb_003935_090 Hb_007952_050 Hb_007952_050 Hb_012055_080--Hb_007952_050 Hb_011033_010 Hb_011033_010 Hb_012055_080--Hb_011033_010 Hb_007574_020 Hb_007574_020 Hb_012055_080--Hb_007574_020 Hb_004218_050 Hb_004218_050 Hb_012055_080--Hb_004218_050 Hb_000925_150 Hb_000925_150 Hb_012055_080--Hb_000925_150 Hb_003935_090--Hb_007574_020 Hb_002232_310 Hb_002232_310 Hb_003935_090--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_003935_090--Hb_004109_100 Hb_001755_040 Hb_001755_040 Hb_003935_090--Hb_001755_040 Hb_023344_100 Hb_023344_100 Hb_003935_090--Hb_023344_100 Hb_002374_470 Hb_002374_470 Hb_007952_050--Hb_002374_470 Hb_008705_030 Hb_008705_030 Hb_007952_050--Hb_008705_030 Hb_007952_050--Hb_004218_050 Hb_010683_070 Hb_010683_070 Hb_007952_050--Hb_010683_070 Hb_000283_030 Hb_000283_030 Hb_007952_050--Hb_000283_030 Hb_010288_030 Hb_010288_030 Hb_011033_010--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_011033_010--Hb_071674_010 Hb_000061_430 Hb_000061_430 Hb_011033_010--Hb_000061_430 Hb_005890_020 Hb_005890_020 Hb_011033_010--Hb_005890_020 Hb_018133_070 Hb_018133_070 Hb_011033_010--Hb_018133_070 Hb_007574_020--Hb_004109_100 Hb_007574_020--Hb_002232_310 Hb_005568_140 Hb_005568_140 Hb_007574_020--Hb_005568_140 Hb_007574_020--Hb_001755_040 Hb_002243_030 Hb_002243_030 Hb_007574_020--Hb_002243_030 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_000925_150--Hb_018133_070 Hb_000925_150--Hb_002374_470 Hb_000925_150--Hb_005890_020 Hb_004115_010 Hb_004115_010 Hb_000925_150--Hb_004115_010 Hb_000925_150--Hb_011033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.16133 32.527 481.98 176.418 38.4334 8.79224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01527 0.766685 2.67409 35.2304 116.154

CAGE analysis