Hb_010683_070

Information

Type -
Description -
Location Contig10683: 45453-47772
Sequence    

Annotation

kegg
ID rcu:RCOM_0868250
description protein with unknown function (EC:2.3.1.97)
nr
ID XP_012066500.1
description PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
swissprot
ID Q94F87
description DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3
trembl
ID V5QQS6
description Cytosine-specific methyltransferase (Fragment) OS=Populus canadensis GN=PnD4 PE=2 SV=1
Gene Ontology
ID GO:0005634
description dna (cytosine-5)-methyltransferase cmt2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010683_070 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
2 Hb_004218_050 0.109633231 - - annexin [Manihot esculenta]
3 Hb_004223_170 0.1344989192 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
4 Hb_001579_190 0.1365261794 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007952_050 0.1414227259 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
6 Hb_010863_030 0.1426456602 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
7 Hb_007101_270 0.145490919 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
8 Hb_002095_050 0.1488791189 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
9 Hb_005050_050 0.1497980097 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
10 Hb_006615_220 0.1515087906 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
11 Hb_001536_020 0.1516088132 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
12 Hb_000343_020 0.1518649566 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
13 Hb_007574_020 0.1525929976 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
14 Hb_008643_220 0.1526322905 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
15 Hb_012055_080 0.15381399 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
16 Hb_000120_300 0.1615204975 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
17 Hb_002081_060 0.1615277878 - - cyclin d, putative [Ricinus communis]
18 Hb_007943_180 0.1624083176 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
19 Hb_003935_090 0.16246644 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
20 Hb_000343_010 0.1639846998 - - F3F9.11 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_010683_070 Hb_010683_070 Hb_004218_050 Hb_004218_050 Hb_010683_070--Hb_004218_050 Hb_004223_170 Hb_004223_170 Hb_010683_070--Hb_004223_170 Hb_001579_190 Hb_001579_190 Hb_010683_070--Hb_001579_190 Hb_007952_050 Hb_007952_050 Hb_010683_070--Hb_007952_050 Hb_010863_030 Hb_010863_030 Hb_010683_070--Hb_010863_030 Hb_007101_270 Hb_007101_270 Hb_010683_070--Hb_007101_270 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004218_050--Hb_004223_170 Hb_008643_220 Hb_008643_220 Hb_004223_170--Hb_008643_220 Hb_002170_060 Hb_002170_060 Hb_004223_170--Hb_002170_060 Hb_007313_030 Hb_007313_030 Hb_004223_170--Hb_007313_030 Hb_001269_060 Hb_001269_060 Hb_004223_170--Hb_001269_060 Hb_000110_240 Hb_000110_240 Hb_001579_190--Hb_000110_240 Hb_001579_190--Hb_008643_220 Hb_000494_010 Hb_000494_010 Hb_001579_190--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_012055_080 Hb_012055_080 Hb_007952_050--Hb_012055_080 Hb_002374_470 Hb_002374_470 Hb_007952_050--Hb_002374_470 Hb_008705_030 Hb_008705_030 Hb_007952_050--Hb_008705_030 Hb_007952_050--Hb_004218_050 Hb_000283_030 Hb_000283_030 Hb_007952_050--Hb_000283_030 Hb_010683_030 Hb_010683_030 Hb_010863_030--Hb_010683_030 Hb_000320_310 Hb_000320_310 Hb_010863_030--Hb_000320_310 Hb_005000_010 Hb_005000_010 Hb_010863_030--Hb_005000_010 Hb_002897_010 Hb_002897_010 Hb_010863_030--Hb_002897_010 Hb_001536_020 Hb_001536_020 Hb_010863_030--Hb_001536_020 Hb_005050_050 Hb_005050_050 Hb_007101_270--Hb_005050_050 Hb_003020_070 Hb_003020_070 Hb_007101_270--Hb_003020_070 Hb_002890_160 Hb_002890_160 Hb_007101_270--Hb_002890_160 Hb_006789_030 Hb_006789_030 Hb_007101_270--Hb_006789_030 Hb_005486_020 Hb_005486_020 Hb_007101_270--Hb_005486_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.315903 0.880849 7.20775 2.08324 0.168652 0.152729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0689735 0 0 1.16409 2.17369

CAGE analysis