Hb_002897_010

Information

Type -
Description -
Location Contig2897: 9066-11887
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09010g
description hypothetical protein
nr
ID XP_012091108.1
description PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID A0A067JFQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03294 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30314: 9981-11879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_010 0.0 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
2 Hb_002463_050 0.0966236615 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003687_040 0.1109852344 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
4 Hb_000316_060 0.1283505279 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
5 Hb_000320_310 0.1290617734 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
6 Hb_008250_020 0.1305382887 - - PREDICTED: U-box domain-containing protein 15-like isoform X1 [Jatropha curcas]
7 Hb_004678_030 0.1321314392 - - fructokinase [Manihot esculenta]
8 Hb_000061_310 0.1340286394 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
9 Hb_001040_080 0.1373841805 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
10 Hb_005000_010 0.1379886969 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
11 Hb_000654_050 0.1380837314 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
12 Hb_010863_030 0.1404689403 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
13 Hb_000015_150 0.1436924686 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
14 Hb_002876_200 0.146473211 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
15 Hb_000274_050 0.146681517 - - Squalene monooxygenase, putative [Ricinus communis]
16 Hb_002965_160 0.1551278102 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
17 Hb_004920_050 0.1554584242 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
18 Hb_001188_050 0.1566889677 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000996_040 0.157176978 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
20 Hb_148346_010 0.1577769339 - - -

Gene co-expression network

sample Hb_002897_010 Hb_002897_010 Hb_002463_050 Hb_002463_050 Hb_002897_010--Hb_002463_050 Hb_003687_040 Hb_003687_040 Hb_002897_010--Hb_003687_040 Hb_000316_060 Hb_000316_060 Hb_002897_010--Hb_000316_060 Hb_000320_310 Hb_000320_310 Hb_002897_010--Hb_000320_310 Hb_008250_020 Hb_008250_020 Hb_002897_010--Hb_008250_020 Hb_004678_030 Hb_004678_030 Hb_002897_010--Hb_004678_030 Hb_002463_050--Hb_004678_030 Hb_002463_050--Hb_003687_040 Hb_000015_150 Hb_000015_150 Hb_002463_050--Hb_000015_150 Hb_000061_310 Hb_000061_310 Hb_002463_050--Hb_000061_310 Hb_000654_050 Hb_000654_050 Hb_002463_050--Hb_000654_050 Hb_003687_040--Hb_000061_310 Hb_001019_160 Hb_001019_160 Hb_003687_040--Hb_001019_160 Hb_031385_010 Hb_031385_010 Hb_003687_040--Hb_031385_010 Hb_001040_080 Hb_001040_080 Hb_003687_040--Hb_001040_080 Hb_000230_360 Hb_000230_360 Hb_003687_040--Hb_000230_360 Hb_000996_040 Hb_000996_040 Hb_000316_060--Hb_000996_040 Hb_000316_060--Hb_003687_040 Hb_000316_060--Hb_001040_080 Hb_007590_110 Hb_007590_110 Hb_000316_060--Hb_007590_110 Hb_000316_060--Hb_001019_160 Hb_005000_010 Hb_005000_010 Hb_000320_310--Hb_005000_010 Hb_004218_200 Hb_004218_200 Hb_000320_310--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_000320_310--Hb_010863_030 Hb_001123_310 Hb_001123_310 Hb_000320_310--Hb_001123_310 Hb_001195_550 Hb_001195_550 Hb_000320_310--Hb_001195_550 Hb_006153_010 Hb_006153_010 Hb_008250_020--Hb_006153_010 Hb_001235_160 Hb_001235_160 Hb_008250_020--Hb_001235_160 Hb_000395_120 Hb_000395_120 Hb_008250_020--Hb_000395_120 Hb_000260_610 Hb_000260_610 Hb_008250_020--Hb_000260_610 Hb_008250_020--Hb_002463_050 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_004678_030--Hb_001019_160 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55685 6.30135 20.4286 13.8045 0.877449 1.72969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163088 0.160409 0.0304902 5.2032 5.50596

CAGE analysis