Hb_000061_310

Information

Type -
Description -
Location Contig61: 283448-290662
Sequence    

Annotation

kegg
ID pop:POPTR_0012s06960g
description POPTRDRAFT_569959; hypothetical protein
nr
ID XP_012080316.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067K8H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11669 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50935: 271453-302038 , PASA_asmbl_50938: 283393-284415 , PASA_asmbl_50939: 285836-290328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_310 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
2 Hb_003687_040 0.0607742234 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
3 Hb_000230_360 0.0725496675 - - PREDICTED: BI1-like protein [Jatropha curcas]
4 Hb_031385_010 0.0841381792 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
5 Hb_001019_160 0.1053184784 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001048_100 0.1088018161 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
7 Hb_002301_370 0.1149250894 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
8 Hb_001040_080 0.1154183836 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
9 Hb_005724_040 0.1202455424 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
10 Hb_004678_030 0.1228274448 - - fructokinase [Manihot esculenta]
11 Hb_002463_050 0.1228559465 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001775_120 0.1253112287 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
13 Hb_000834_220 0.1282685675 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_001221_390 0.1289327876 - - Phospholipase C 4 precursor, putative [Ricinus communis]
15 Hb_000654_050 0.131905235 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
16 Hb_000635_050 0.1331950949 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
17 Hb_000689_010 0.1336210364 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
18 Hb_002897_010 0.1340286394 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
19 Hb_022092_110 0.1342557963 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
20 Hb_001440_010 0.1353689353 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000061_310 Hb_000061_310 Hb_003687_040 Hb_003687_040 Hb_000061_310--Hb_003687_040 Hb_000230_360 Hb_000230_360 Hb_000061_310--Hb_000230_360 Hb_031385_010 Hb_031385_010 Hb_000061_310--Hb_031385_010 Hb_001019_160 Hb_001019_160 Hb_000061_310--Hb_001019_160 Hb_001048_100 Hb_001048_100 Hb_000061_310--Hb_001048_100 Hb_002301_370 Hb_002301_370 Hb_000061_310--Hb_002301_370 Hb_003687_040--Hb_001019_160 Hb_003687_040--Hb_031385_010 Hb_001040_080 Hb_001040_080 Hb_003687_040--Hb_001040_080 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_000230_360--Hb_002301_370 Hb_000230_360--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_000230_360--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_000230_360--Hb_000834_220 Hb_000230_360--Hb_001019_160 Hb_031385_010--Hb_001048_100 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_001019_160--Hb_000834_220 Hb_001019_160--Hb_031385_010 Hb_001019_160--Hb_001440_010 Hb_000760_080 Hb_000760_080 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_001048_100--Hb_002301_370 Hb_001048_100--Hb_000230_360 Hb_002301_370--Hb_000731_210 Hb_002301_370--Hb_001440_010 Hb_002301_370--Hb_031385_010 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.682974 4.97171 10.7786 8.3297 0.690791 0.568999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151336 0.104197 0.226709 4.60684 5.59208

CAGE analysis