Hb_001019_160

Information

Type -
Description -
Location Contig1019: 219936-221668
Sequence    

Annotation

kegg
ID rcu:RCOM_0220620
description hypothetical protein
nr
ID XP_002524445.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SEM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0220620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00936: 220372-221163 , PASA_asmbl_00937: 220372-221354 , PASA_asmbl_00938: 219928-222607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003687_040 0.0943023819 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
3 Hb_000834_220 0.0968979665 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
4 Hb_000230_360 0.1010184701 - - PREDICTED: BI1-like protein [Jatropha curcas]
5 Hb_031385_010 0.1022543294 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
6 Hb_001440_010 0.1051768916 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
7 Hb_000061_310 0.1053184784 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
8 Hb_002301_370 0.1074198814 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
9 Hb_001040_080 0.111203208 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
10 Hb_022092_110 0.1120359051 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
11 Hb_010672_050 0.1127738828 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
12 Hb_000735_060 0.1155076162 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_005333_080 0.116233274 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004678_030 0.1174838431 - - fructokinase [Manihot esculenta]
15 Hb_000316_060 0.1235892004 - - hypothetical protein CISIN_1g017081mg [Citrus sinensis]
16 Hb_001936_180 0.1279004714 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
17 Hb_000731_210 0.1295961473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003606_050 0.1308317648 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
19 Hb_032920_030 0.1322505729 - - signal transducer, putative [Ricinus communis]
20 Hb_001597_030 0.1352503802 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001019_160 Hb_001019_160 Hb_003687_040 Hb_003687_040 Hb_001019_160--Hb_003687_040 Hb_000834_220 Hb_000834_220 Hb_001019_160--Hb_000834_220 Hb_000230_360 Hb_000230_360 Hb_001019_160--Hb_000230_360 Hb_031385_010 Hb_031385_010 Hb_001019_160--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_001019_160--Hb_001440_010 Hb_000061_310 Hb_000061_310 Hb_001019_160--Hb_000061_310 Hb_003687_040--Hb_000061_310 Hb_003687_040--Hb_031385_010 Hb_001040_080 Hb_001040_080 Hb_003687_040--Hb_001040_080 Hb_003687_040--Hb_000230_360 Hb_002463_050 Hb_002463_050 Hb_003687_040--Hb_002463_050 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_000230_360--Hb_031385_010 Hb_000230_360--Hb_001440_010 Hb_000230_360--Hb_000834_220 Hb_001048_100 Hb_001048_100 Hb_031385_010--Hb_001048_100 Hb_031385_010--Hb_000061_310 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_001440_010--Hb_003656_090 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_000061_310--Hb_001048_100 Hb_000061_310--Hb_002301_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.469361 7.30961 17.9199 17.4003 0.74634 0.325698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.204745 0.684376 0.370299 8.06388 6.83165

CAGE analysis