Hb_000398_140

Information

Type -
Description -
Location Contig398: 210157-219921
Sequence    

Annotation

kegg
ID rcu:RCOM_0825000
description Methionine S-methyltransferase, putative (EC:2.1.1.12)
nr
ID XP_012069132.1
description PREDICTED: methionine S-methyltransferase [Jatropha curcas]
swissprot
ID Q9SWR3
description Methionine S-methyltransferase OS=Wedelia biflora GN=MMT1 PE=1 SV=1
trembl
ID A0A067L0Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24897 PE=4 SV=1
Gene Ontology
ID GO:0005829
description methionine s-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39673: 210003-233903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000398_140 0.0 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
2 Hb_004421_010 0.0821849028 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_059000_010 0.0962085847 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
4 Hb_001141_160 0.0974256939 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
5 Hb_001189_100 0.1007410109 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
6 Hb_004122_060 0.1014113371 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
7 Hb_012743_020 0.1020610468 - - serine/threonine protein phosphatase, putative [Ricinus communis]
8 Hb_002301_370 0.1062695324 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
9 Hb_015306_010 0.1064306791 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
10 Hb_009554_030 0.1080781085 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
11 Hb_001544_070 0.1098542656 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
12 Hb_004079_100 0.1101463266 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
13 Hb_003879_020 0.1118222727 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
14 Hb_000342_020 0.1129531317 - - bel1 homeotic protein, putative [Ricinus communis]
15 Hb_003411_020 0.1181858242 - - alpha-glucosidase, putative [Ricinus communis]
16 Hb_001956_080 0.1187751943 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
17 Hb_003106_110 0.1191380395 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
18 Hb_000589_240 0.1193194526 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_000096_210 0.1197504253 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
20 Hb_000946_050 0.1204191709 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000398_140 Hb_000398_140 Hb_004421_010 Hb_004421_010 Hb_000398_140--Hb_004421_010 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_001189_100 Hb_001189_100 Hb_000398_140--Hb_001189_100 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_012743_020 Hb_012743_020 Hb_000398_140--Hb_012743_020 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_000613_250 Hb_000613_250 Hb_004421_010--Hb_000613_250 Hb_004421_010--Hb_012743_020 Hb_000472_020 Hb_000472_020 Hb_004421_010--Hb_000472_020 Hb_059000_010--Hb_001141_160 Hb_059000_010--Hb_004122_060 Hb_009554_030 Hb_009554_030 Hb_059000_010--Hb_009554_030 Hb_000946_050 Hb_000946_050 Hb_059000_010--Hb_000946_050 Hb_001544_070 Hb_001544_070 Hb_059000_010--Hb_001544_070 Hb_014250_010 Hb_014250_010 Hb_059000_010--Hb_014250_010 Hb_001141_160--Hb_004122_060 Hb_001141_160--Hb_000946_050 Hb_030982_050 Hb_030982_050 Hb_001141_160--Hb_030982_050 Hb_001141_160--Hb_001544_070 Hb_004079_100 Hb_004079_100 Hb_001189_100--Hb_004079_100 Hb_073808_010 Hb_073808_010 Hb_001189_100--Hb_073808_010 Hb_019026_050 Hb_019026_050 Hb_001189_100--Hb_019026_050 Hb_008066_080 Hb_008066_080 Hb_001189_100--Hb_008066_080 Hb_000594_160 Hb_000594_160 Hb_001189_100--Hb_000594_160 Hb_004122_060--Hb_009554_030 Hb_004122_060--Hb_001544_070 Hb_004122_060--Hb_000946_050 Hb_000092_030 Hb_000092_030 Hb_004122_060--Hb_000092_030 Hb_005357_020 Hb_005357_020 Hb_012743_020--Hb_005357_020 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_000589_240 Hb_000589_240 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_029260_010 Hb_029260_010 Hb_012743_020--Hb_029260_010 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180264 2.09535 2.12646 3.25953 0.0349104 0.0212909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0272447 0.0428797 0.0615783 2.71599 2.17513

CAGE analysis