Hb_009554_030

Information

Type -
Description -
Location Contig9554: 8393-14294
Sequence    

Annotation

kegg
ID pmum:103341648
description chlorophyll synthase, chloroplastic
nr
ID XP_008243417.1
description PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
swissprot
ID Q38833
description Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1
trembl
ID A0A067JG24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00458 PE=4 SV=1
Gene Ontology
ID GO:0009534
description chlorophyll chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63526: 8211-14302 , PASA_asmbl_63527: 8627-14305
cDNA
(Sanger)
(ID:Location)		 005_I22.ab1: 11406-14302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009554_030 0.0 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
2 Hb_004122_060 0.0710176784 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
3 Hb_059000_010 0.0768110744 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
4 Hb_000096_210 0.0793740854 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
5 Hb_000866_190 0.0796176152 - - transcription factor, putative [Ricinus communis]
6 Hb_014250_010 0.0813550906 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
7 Hb_015306_010 0.0978251023 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
8 Hb_005496_170 0.1016312509 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
9 Hb_001141_160 0.1050864934 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
10 Hb_000946_050 0.1064924288 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000398_140 0.1080781085 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
12 Hb_010880_010 0.1084116636 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_005766_010 0.1089104721 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_000203_080 0.110889368 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
15 Hb_030982_050 0.1112687066 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
16 Hb_003224_010 0.1113009139 - - -
17 Hb_002503_050 0.1138549704 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_000189_160 0.113864768 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_004627_020 0.1141181776 - - Protein MLO, putative [Ricinus communis]
20 Hb_000046_430 0.1167397692 - - hypothetical protein JCGZ_02013 [Jatropha curcas]

Gene co-expression network

sample Hb_009554_030 Hb_009554_030 Hb_004122_060 Hb_004122_060 Hb_009554_030--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_009554_030--Hb_059000_010 Hb_000096_210 Hb_000096_210 Hb_009554_030--Hb_000096_210 Hb_000866_190 Hb_000866_190 Hb_009554_030--Hb_000866_190 Hb_014250_010 Hb_014250_010 Hb_009554_030--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_009554_030--Hb_015306_010 Hb_004122_060--Hb_059000_010 Hb_001544_070 Hb_001544_070 Hb_004122_060--Hb_001544_070 Hb_000946_050 Hb_000946_050 Hb_004122_060--Hb_000946_050 Hb_001141_160 Hb_001141_160 Hb_004122_060--Hb_001141_160 Hb_000092_030 Hb_000092_030 Hb_004122_060--Hb_000092_030 Hb_059000_010--Hb_001141_160 Hb_059000_010--Hb_000946_050 Hb_059000_010--Hb_001544_070 Hb_059000_010--Hb_014250_010 Hb_000096_210--Hb_000946_050 Hb_000096_210--Hb_014250_010 Hb_039022_020 Hb_039022_020 Hb_000096_210--Hb_039022_020 Hb_000096_210--Hb_004122_060 Hb_005766_010 Hb_005766_010 Hb_000096_210--Hb_005766_010 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_000866_190--Hb_014250_010 Hb_000866_190--Hb_005766_010 Hb_000866_190--Hb_015306_010 Hb_001135_010 Hb_001135_010 Hb_000866_190--Hb_001135_010 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_014250_010--Hb_005766_010 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150 Hb_003106_110 Hb_003106_110 Hb_015306_010--Hb_003106_110 Hb_000398_140 Hb_000398_140 Hb_015306_010--Hb_000398_140 Hb_015306_010--Hb_004122_060 Hb_000258_210 Hb_000258_210 Hb_015306_010--Hb_000258_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0710077 43.0137 61.5536 54.3048 0.191298 0.0440674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15269 0.0600565 0.168007 70.6295 54.9013

CAGE analysis