Hb_059000_010

Information

Type -
Description -
Location Contig59000: 592-1011
Sequence    

Annotation

kegg
ID rcu:RCOM_1092970
description cationic amino acid transporter, putative
nr
ID KDP26578.1
description hypothetical protein JCGZ_17736 [Jatropha curcas]
swissprot
ID Q84MA5
description Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1
trembl
ID A0A067JUR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17736 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059000_010 0.0 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
2 Hb_001141_160 0.0393204364 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
3 Hb_004122_060 0.0616137699 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
4 Hb_009554_030 0.0768110744 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
5 Hb_000946_050 0.0894206353 - - cytochrome P450, putative [Ricinus communis]
6 Hb_001544_070 0.0928112691 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
7 Hb_014250_010 0.0944037321 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
8 Hb_000398_140 0.0962085847 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
9 Hb_000096_210 0.0976151745 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
10 Hb_030982_050 0.0993000165 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
11 Hb_014967_020 0.1002823362 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000866_190 0.1039861694 - - transcription factor, putative [Ricinus communis]
13 Hb_000092_030 0.107531797 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
14 Hb_000594_160 0.1100009525 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
15 Hb_000258_210 0.1105250017 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
16 Hb_005766_010 0.1145848192 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_015306_010 0.1156645295 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
18 Hb_015001_030 0.124772088 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
19 Hb_003656_090 0.1265673961 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
20 Hb_001638_150 0.1282258345 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_059000_010 Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_059000_010--Hb_001141_160 Hb_004122_060 Hb_004122_060 Hb_059000_010--Hb_004122_060 Hb_009554_030 Hb_009554_030 Hb_059000_010--Hb_009554_030 Hb_000946_050 Hb_000946_050 Hb_059000_010--Hb_000946_050 Hb_001544_070 Hb_001544_070 Hb_059000_010--Hb_001544_070 Hb_014250_010 Hb_014250_010 Hb_059000_010--Hb_014250_010 Hb_001141_160--Hb_004122_060 Hb_001141_160--Hb_000946_050 Hb_000398_140 Hb_000398_140 Hb_001141_160--Hb_000398_140 Hb_030982_050 Hb_030982_050 Hb_001141_160--Hb_030982_050 Hb_001141_160--Hb_001544_070 Hb_004122_060--Hb_009554_030 Hb_004122_060--Hb_001544_070 Hb_004122_060--Hb_000946_050 Hb_000092_030 Hb_000092_030 Hb_004122_060--Hb_000092_030 Hb_000096_210 Hb_000096_210 Hb_009554_030--Hb_000096_210 Hb_000866_190 Hb_000866_190 Hb_009554_030--Hb_000866_190 Hb_009554_030--Hb_014250_010 Hb_015306_010 Hb_015306_010 Hb_009554_030--Hb_015306_010 Hb_000946_050--Hb_000092_030 Hb_000946_050--Hb_000096_210 Hb_002450_180 Hb_002450_180 Hb_000946_050--Hb_002450_180 Hb_174101_010 Hb_174101_010 Hb_001544_070--Hb_174101_010 Hb_001174_030 Hb_001174_030 Hb_001544_070--Hb_001174_030 Hb_000472_020 Hb_000472_020 Hb_001544_070--Hb_000472_020 Hb_001544_070--Hb_000092_030 Hb_001706_020 Hb_001706_020 Hb_001544_070--Hb_001706_020 Hb_014250_010--Hb_000096_210 Hb_015001_030 Hb_015001_030 Hb_014250_010--Hb_015001_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_014250_010--Hb_000866_190 Hb_001638_150 Hb_001638_150 Hb_014250_010--Hb_001638_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.86141 1.12634 1.47846 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.2736 1.01974

CAGE analysis