Hb_001135_010

Information

Type -
Description -
Location Contig1135: 12631-15331
Sequence    

Annotation

kegg
ID cic:CICLE_v10024612mg
description hypothetical protein
nr
ID XP_006443419.1
description hypothetical protein CICLE_v10024612mg [Citrus clementina]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID V4VTZ9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024612mg PE=4 SV=1
Gene Ontology
ID GO:0007165
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04016: 12753-12961 , PASA_asmbl_04018: 14830-15074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_010 0.0 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
2 Hb_004162_320 0.0894846349 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
3 Hb_015001_030 0.0930282038 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
4 Hb_003506_010 0.0949389047 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
5 Hb_014250_010 0.0997224477 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
6 Hb_000866_190 0.1000361369 - - transcription factor, putative [Ricinus communis]
7 Hb_002918_120 0.1054954658 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000189_160 0.1071273405 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_021346_020 0.1077718279 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
10 Hb_001104_020 0.1093427909 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000732_220 0.111846568 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
12 Hb_000152_120 0.1131415768 - - alpha-l-fucosidase, putative [Ricinus communis]
13 Hb_002078_320 0.1143427801 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
14 Hb_002635_020 0.1144412185 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
15 Hb_005892_040 0.1159667922 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
16 Hb_000866_040 0.1178196061 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
17 Hb_000834_220 0.1179759179 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
18 Hb_001638_150 0.1182833664 - - acyltransferase, putative [Ricinus communis]
19 Hb_020805_070 0.1189622121 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
20 Hb_010174_180 0.1193283538 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001135_010 Hb_001135_010 Hb_004162_320 Hb_004162_320 Hb_001135_010--Hb_004162_320 Hb_015001_030 Hb_015001_030 Hb_001135_010--Hb_015001_030 Hb_003506_010 Hb_003506_010 Hb_001135_010--Hb_003506_010 Hb_014250_010 Hb_014250_010 Hb_001135_010--Hb_014250_010 Hb_000866_190 Hb_000866_190 Hb_001135_010--Hb_000866_190 Hb_002918_120 Hb_002918_120 Hb_001135_010--Hb_002918_120 Hb_004162_320--Hb_003506_010 Hb_005892_040 Hb_005892_040 Hb_004162_320--Hb_005892_040 Hb_020805_070 Hb_020805_070 Hb_004162_320--Hb_020805_070 Hb_002078_320 Hb_002078_320 Hb_004162_320--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_004162_320--Hb_000162_200 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_001638_150 Hb_001638_150 Hb_015001_030--Hb_001638_150 Hb_015001_030--Hb_014250_010 Hb_021346_020 Hb_021346_020 Hb_015001_030--Hb_021346_020 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010 Hb_003656_090 Hb_003656_090 Hb_015001_030--Hb_003656_090 Hb_003506_010--Hb_005892_040 Hb_003506_010--Hb_002078_320 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_003506_010--Hb_000162_200 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_009554_030 Hb_009554_030 Hb_014250_010--Hb_009554_030 Hb_005766_010 Hb_005766_010 Hb_014250_010--Hb_005766_010 Hb_014250_010--Hb_000866_190 Hb_014250_010--Hb_001638_150 Hb_000866_190--Hb_009554_030 Hb_006469_090 Hb_006469_090 Hb_000866_190--Hb_006469_090 Hb_000866_190--Hb_005766_010 Hb_015306_010 Hb_015306_010 Hb_000866_190--Hb_015306_010 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_002918_120--Hb_021346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187034 0.255253 0.862472 0.618656 0.00756104 0.00708557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.524769 0.54505

CAGE analysis