Hb_003106_110

Information

Type -
Description -
Location Contig3106: 64121-70470
Sequence    

Annotation

kegg
ID rcu:RCOM_1512620
description betaine-aldehyde dehydrogenase, putative (EC:1.2.1.8)
nr
ID NP_001292971.1
description betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9S795
description Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1
trembl
ID B2BBY6
description Betaine-aldehyde dehydrogenase OS=Jatropha curcas GN=BADH PE=2 SV=1
Gene Ontology
ID GO:0008802
description betaine-aldehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32881: 64155-70285
cDNA
(Sanger)
(ID:Location)		 011_L14.ab1: 67575-70246 , 024_P06.ab1: 67774-70205 , 034_H11.ab1: 67740-70246 , 035_I13.ab1: 67975-70246 , 036_P06.ab1: 67770-70246 , 050_K23.ab1: 67982-70245

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_110 0.0 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
2 Hb_000739_160 0.0869610662 - - DNA binding protein, putative [Ricinus communis]
3 Hb_015306_010 0.0928667716 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
4 Hb_002301_370 0.1107798003 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
5 Hb_005485_070 0.1124064131 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_000085_380 0.1162763252 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000760_080 0.11735775 - - mutt domain protein, putative [Ricinus communis]
8 Hb_000398_140 0.1191380395 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
9 Hb_000438_010 0.1203146226 - - -
10 Hb_009193_060 0.1203657996 - - PREDICTED: ureide permease 1-like [Jatropha curcas]
11 Hb_003106_230 0.1206148208 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
12 Hb_000230_360 0.1228846384 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_000318_170 0.1238225945 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
14 Hb_001189_100 0.1252837698 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
15 Hb_001008_110 0.1271110473 - - -
16 Hb_005766_010 0.1273479072 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_000866_190 0.127694987 - - transcription factor, putative [Ricinus communis]
18 Hb_000417_280 0.1279716542 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002811_020 0.1285337714 - - Cysteine synthase [Morus notabilis]
20 Hb_006934_020 0.1301791065 - - hypothetical protein POPTR_0004s09051g [Populus trichocarpa]

Gene co-expression network

sample Hb_003106_110 Hb_003106_110 Hb_000739_160 Hb_000739_160 Hb_003106_110--Hb_000739_160 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_005485_070 Hb_005485_070 Hb_003106_110--Hb_005485_070 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080 Hb_000096_210 Hb_000096_210 Hb_000739_160--Hb_000096_210 Hb_006634_090 Hb_006634_090 Hb_000739_160--Hb_006634_090 Hb_006934_020 Hb_006934_020 Hb_000739_160--Hb_006934_020 Hb_000739_160--Hb_002301_370 Hb_000417_280 Hb_000417_280 Hb_000739_160--Hb_000417_280 Hb_000866_190 Hb_000866_190 Hb_015306_010--Hb_000866_190 Hb_009554_030 Hb_009554_030 Hb_015306_010--Hb_009554_030 Hb_000398_140 Hb_000398_140 Hb_015306_010--Hb_000398_140 Hb_004122_060 Hb_004122_060 Hb_015306_010--Hb_004122_060 Hb_000258_210 Hb_000258_210 Hb_015306_010--Hb_000258_210 Hb_000230_360 Hb_000230_360 Hb_002301_370--Hb_000230_360 Hb_000731_210 Hb_000731_210 Hb_002301_370--Hb_000731_210 Hb_001440_010 Hb_001440_010 Hb_002301_370--Hb_001440_010 Hb_031385_010 Hb_031385_010 Hb_002301_370--Hb_031385_010 Hb_001048_100 Hb_001048_100 Hb_002301_370--Hb_001048_100 Hb_002301_370--Hb_000398_140 Hb_000116_240 Hb_000116_240 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_000590_070 Hb_000590_070 Hb_005485_070--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_001008_110 Hb_001008_110 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_000760_080--Hb_001048_100 Hb_000024_130 Hb_000024_130 Hb_000760_080--Hb_000024_130 Hb_005568_050 Hb_005568_050 Hb_000760_080--Hb_005568_050 Hb_002503_050 Hb_002503_050 Hb_000760_080--Hb_002503_050 Hb_033312_050 Hb_033312_050 Hb_000760_080--Hb_033312_050 Hb_000760_080--Hb_000731_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06284 61.202 85.1864 90.9182 3.58305 5.85882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47816 0.420008 1.32013 110.507 76.588

CAGE analysis