Hb_000590_070

Information

Type -
Description -
Location Contig590: 91761-104628
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21790g
description POPTRDRAFT_1092225; hypothetical protein
nr
ID XP_012072944.1
description PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
swissprot
ID A7WM73
description Beta-hexosaminidase 1 OS=Arabidopsis thaliana GN=HEXO1 PE=1 SV=1
trembl
ID A0A067KZW0
description Beta-hexosaminidase OS=Jatropha curcas GN=JCGZ_08410 PE=3 SV=1
Gene Ontology
ID GO:0005773
description beta-hexosaminidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50197: 92110-104296 , PASA_asmbl_50198: 91811-104296 , PASA_asmbl_50199: 97104-101206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_070 0.0 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
2 Hb_005181_060 0.0794556914 - - ATP-citrate synthase, putative [Ricinus communis]
3 Hb_000116_240 0.0933490316 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
4 Hb_007317_020 0.1041046086 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
5 Hb_000309_030 0.1046582771 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
6 Hb_005485_070 0.1080231715 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_000120_740 0.1142129561 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
8 Hb_003683_130 0.1156574988 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
9 Hb_000261_310 0.1202452221 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
10 Hb_004883_020 0.1208484939 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
11 Hb_009535_030 0.1226855616 - - CP2 [Hevea brasiliensis]
12 Hb_000473_030 0.1243282398 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
13 Hb_001894_010 0.1247720795 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
14 Hb_003371_190 0.1262681689 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
15 Hb_001277_400 0.1270280274 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
16 Hb_000244_260 0.1296839008 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
17 Hb_012053_020 0.1305892734 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
18 Hb_000019_170 0.1312580449 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
19 Hb_005854_040 0.1312867575 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001105_130 0.1316497788 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_000590_070 Hb_000590_070 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_005485_070 Hb_005485_070 Hb_000590_070--Hb_005485_070 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740 Hb_002527_060 Hb_002527_060 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_001894_010 Hb_001894_010 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_000116_240--Hb_005485_070 Hb_000116_240--Hb_000309_030 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000318_170 Hb_000318_170 Hb_000116_240--Hb_000318_170 Hb_005854_040 Hb_005854_040 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_098533_010 Hb_098533_010 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_036388_010 Hb_036388_010 Hb_000120_740--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92028 6.0113 10.6623 18.4331 2.02406 2.45715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05543 1.24573 1.9765 16.9858 11.9306

CAGE analysis