Hb_002527_060

Information

Type -
Description -
Location Contig2527: 56127-58505
Sequence    

Annotation

kegg
ID rcu:RCOM_1333200
description oligopeptide transporter, putative
nr
ID XP_012075471.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
swissprot
ID Q0WP01
description Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana GN=NPF5.10 PE=2 SV=1
trembl
ID A0A067KS40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10942 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26442: 56180-56474 , PASA_asmbl_26443: 56486-56709 , PASA_asmbl_26445: 57633-57918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002527_060 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
2 Hb_005181_060 0.1249401734 - - ATP-citrate synthase, putative [Ricinus communis]
3 Hb_001894_010 0.1262414753 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
4 Hb_000590_070 0.132897001 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
5 Hb_001619_030 0.1361905925 - - annexin, putative [Ricinus communis]
6 Hb_005485_070 0.1445658234 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_002739_040 0.1494325594 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
8 Hb_000116_240 0.1508894805 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
9 Hb_000720_090 0.1536398468 transcription factor TF Family: MYB myb, putative [Ricinus communis]
10 Hb_008695_150 0.1560245807 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
11 Hb_001277_400 0.1614112313 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
12 Hb_012053_020 0.1634840046 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
13 Hb_004958_020 0.1653242228 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
14 Hb_000330_150 0.1656547273 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
15 Hb_004883_020 0.1706036404 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
16 Hb_000309_030 0.1727790635 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
17 Hb_098533_010 0.1735187029 - - hypothetical protein L484_003492 [Morus notabilis]
18 Hb_000042_380 0.1738317005 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
19 Hb_000473_030 0.1740970716 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
20 Hb_003092_050 0.176280031 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]

Gene co-expression network

sample Hb_002527_060 Hb_002527_060 Hb_005181_060 Hb_005181_060 Hb_002527_060--Hb_005181_060 Hb_001894_010 Hb_001894_010 Hb_002527_060--Hb_001894_010 Hb_000590_070 Hb_000590_070 Hb_002527_060--Hb_000590_070 Hb_001619_030 Hb_001619_030 Hb_002527_060--Hb_001619_030 Hb_005485_070 Hb_005485_070 Hb_002527_060--Hb_005485_070 Hb_002739_040 Hb_002739_040 Hb_002527_060--Hb_002739_040 Hb_005181_060--Hb_000590_070 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_001894_010--Hb_005485_070 Hb_001894_010--Hb_000590_070 Hb_000120_740 Hb_000120_740 Hb_001894_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_001894_010--Hb_036388_010 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_000590_070--Hb_005485_070 Hb_000590_070--Hb_000120_740 Hb_001619_030--Hb_005181_060 Hb_017559_010 Hb_017559_010 Hb_001619_030--Hb_017559_010 Hb_004330_080 Hb_004330_080 Hb_001619_030--Hb_004330_080 Hb_078081_010 Hb_078081_010 Hb_001619_030--Hb_078081_010 Hb_001619_030--Hb_000590_070 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_000003_020 Hb_000003_020 Hb_002739_040--Hb_000003_020 Hb_004324_030 Hb_004324_030 Hb_002739_040--Hb_004324_030 Hb_003142_060 Hb_003142_060 Hb_002739_040--Hb_003142_060 Hb_004079_100 Hb_004079_100 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_000834_040 Hb_000834_040 Hb_002739_040--Hb_000834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.803578 0.937623 2.6289 4.54161 0.438838 0.057217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24896 0.282929 0.287321 5.17055 3.10902

CAGE analysis