Hb_000473_030

Information

Type -
Description -
Location Contig473: 52125-57292
Sequence    

Annotation

kegg
ID rcu:RCOM_1190550
description hypothetical protein
nr
ID KDP29468.1
description hypothetical protein JCGZ_19297 [Jatropha curcas]
swissprot
ID P57681
description Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1
trembl
ID A0A067K338
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19297 PE=4 SV=1
Gene Ontology
ID GO:0005774
description farnesylcysteine lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44407: 52446-57235 , PASA_asmbl_44408: 53601-53906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_030 0.0 - - hypothetical protein JCGZ_19297 [Jatropha curcas]
2 Hb_000019_170 0.1061892857 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
3 Hb_000590_070 0.1243282398 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
4 Hb_007317_020 0.1269791724 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
5 Hb_000365_200 0.1300638715 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
6 Hb_009535_030 0.134991809 - - CP2 [Hevea brasiliensis]
7 Hb_005181_060 0.1358957607 - - ATP-citrate synthase, putative [Ricinus communis]
8 Hb_001780_130 0.1390542217 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
9 Hb_003371_190 0.1422130006 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
10 Hb_000330_150 0.1425686265 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
11 Hb_098533_010 0.1446541787 - - hypothetical protein L484_003492 [Morus notabilis]
12 Hb_153257_010 0.14933724 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
13 Hb_000823_010 0.1494831305 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
14 Hb_000337_010 0.1511045606 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
15 Hb_002026_070 0.1516000114 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
16 Hb_003683_130 0.1518526336 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
17 Hb_002603_010 0.151976524 - - unnamed protein product [Vitis vinifera]
18 Hb_000258_090 0.153025508 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
19 Hb_000244_260 0.1533639523 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
20 Hb_010381_020 0.154204191 - - Endosomal P24A protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000473_030 Hb_000473_030 Hb_000019_170 Hb_000019_170 Hb_000473_030--Hb_000019_170 Hb_000590_070 Hb_000590_070 Hb_000473_030--Hb_000590_070 Hb_007317_020 Hb_007317_020 Hb_000473_030--Hb_007317_020 Hb_000365_200 Hb_000365_200 Hb_000473_030--Hb_000365_200 Hb_009535_030 Hb_009535_030 Hb_000473_030--Hb_009535_030 Hb_005181_060 Hb_005181_060 Hb_000473_030--Hb_005181_060 Hb_003125_180 Hb_003125_180 Hb_000019_170--Hb_003125_180 Hb_003058_200 Hb_003058_200 Hb_000019_170--Hb_003058_200 Hb_002072_010 Hb_002072_010 Hb_000019_170--Hb_002072_010 Hb_102763_010 Hb_102763_010 Hb_000019_170--Hb_102763_010 Hb_000823_010 Hb_000823_010 Hb_000019_170--Hb_000823_010 Hb_000157_070 Hb_000157_070 Hb_000019_170--Hb_000157_070 Hb_000590_070--Hb_005181_060 Hb_000116_240 Hb_000116_240 Hb_000590_070--Hb_000116_240 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_005485_070 Hb_005485_070 Hb_000590_070--Hb_005485_070 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740 Hb_005854_040 Hb_005854_040 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_098533_010 Hb_098533_010 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_003683_130 Hb_003683_130 Hb_000365_200--Hb_003683_130 Hb_004297_090 Hb_004297_090 Hb_000365_200--Hb_004297_090 Hb_000260_400 Hb_000260_400 Hb_000365_200--Hb_000260_400 Hb_022092_010 Hb_022092_010 Hb_000365_200--Hb_022092_010 Hb_001677_100 Hb_001677_100 Hb_000365_200--Hb_001677_100 Hb_006816_230 Hb_006816_230 Hb_000365_200--Hb_006816_230 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_009535_030--Hb_007229_050 Hb_009535_030--Hb_001473_170 Hb_002527_060 Hb_002527_060 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_001894_010 Hb_001894_010 Hb_005181_060--Hb_001894_010 Hb_005181_060--Hb_005485_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61457 7.84662 8.80084 14.1314 4.36992 1.28255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.841724 0.888872 3.9348 19.7102 12.5664

CAGE analysis