Hb_001247_270

Information

Type -
Description -
Location Contig1247: 190138-191511
Sequence    

Annotation

kegg
ID rcu:RCOM_1436650
description cysteine desulfurylase, putative (EC:5.1.1.17)
nr
ID XP_012088823.1
description PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
swissprot
ID Q3E6S9
description Probable L-cysteine desulfhydrase, chloroplastic OS=Arabidopsis thaliana GN=CpNIFS3 PE=1 SV=1
trembl
ID A0A067JTL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23168 PE=3 SV=1
Gene Ontology
ID GO:0030170
description l-cysteine desulfhydrase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07499: 187809-191576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_270 0.0 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
2 Hb_029584_100 0.0883564898 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
3 Hb_009535_030 0.1019436045 - - CP2 [Hevea brasiliensis]
4 Hb_000959_120 0.1136694678 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
5 Hb_003006_080 0.1271853324 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_004522_030 0.1297743593 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
7 Hb_073808_010 0.1329394677 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
8 Hb_000979_160 0.1336139677 - - hypothetical protein RCOM_0629030 [Ricinus communis]
9 Hb_132840_030 0.1345811161 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
10 Hb_001054_090 0.1356607655 - - Potassium channel SKOR, putative [Ricinus communis]
11 Hb_000003_020 0.1361339644 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
12 Hb_003030_010 0.1367523739 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
13 Hb_003371_190 0.1381290541 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
14 Hb_005588_120 0.1404330746 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006949_060 0.1405891793 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
16 Hb_042202_020 0.1423850981 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
17 Hb_001446_060 0.1432651302 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_001430_100 0.1432813322 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000085_380 0.1433879825 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002671_060 0.1463263906 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_270 Hb_001247_270 Hb_029584_100 Hb_029584_100 Hb_001247_270--Hb_029584_100 Hb_009535_030 Hb_009535_030 Hb_001247_270--Hb_009535_030 Hb_000959_120 Hb_000959_120 Hb_001247_270--Hb_000959_120 Hb_003006_080 Hb_003006_080 Hb_001247_270--Hb_003006_080 Hb_004522_030 Hb_004522_030 Hb_001247_270--Hb_004522_030 Hb_073808_010 Hb_073808_010 Hb_001247_270--Hb_073808_010 Hb_029584_100--Hb_009535_030 Hb_007229_050 Hb_007229_050 Hb_029584_100--Hb_007229_050 Hb_019654_110 Hb_019654_110 Hb_029584_100--Hb_019654_110 Hb_001235_130 Hb_001235_130 Hb_029584_100--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_029584_100--Hb_098533_010 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_009535_030--Hb_001235_130 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_000095_070 Hb_000095_070 Hb_000959_120--Hb_000095_070 Hb_000979_160 Hb_000979_160 Hb_000959_120--Hb_000979_160 Hb_001728_130 Hb_001728_130 Hb_000959_120--Hb_001728_130 Hb_001976_020 Hb_001976_020 Hb_000959_120--Hb_001976_020 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_010050_020 Hb_010050_020 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_034507_060 Hb_034507_060 Hb_004522_030--Hb_034507_060 Hb_001189_100 Hb_001189_100 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_073808_010--Hb_001728_130 Hb_042202_020 Hb_042202_020 Hb_073808_010--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79253 20.5651 11.37 34.7024 2.57138 1.21272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28437 1.65906 3.46238 23.7838 21.8778

CAGE analysis