Hb_000979_160

Information

Type -
Description -
Location Contig979: 177164-180925
Sequence    

Annotation

kegg
ID rcu:RCOM_0629030
description hypothetical protein
nr
ID XP_002527786.1
description hypothetical protein RCOM_0629030 [Ricinus communis]
swissprot
ID Q9CAC4
description Myosin-binding protein 2 OS=Arabidopsis thaliana GN=MYOB2 PE=1 SV=1
trembl
ID B9SP67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64305: 176769-177639 , PASA_asmbl_64306: 177652-178136 , PASA_asmbl_64307: 178337-179291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_160 0.0 - - hypothetical protein RCOM_0629030 [Ricinus communis]
2 Hb_001976_020 0.0993680522 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000959_120 0.1142910825 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
4 Hb_007027_010 0.1263510012 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
5 Hb_002097_080 0.1334790297 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
6 Hb_001247_270 0.1336139677 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
7 Hb_003006_080 0.133773501 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
8 Hb_098795_030 0.135906652 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
9 Hb_002685_220 0.1385437796 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
10 Hb_004462_030 0.1501620876 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
11 Hb_001486_060 0.1529194801 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
12 Hb_001446_060 0.1539508666 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001728_130 0.1539792356 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_073808_010 0.1589969001 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
15 Hb_000095_070 0.1631119271 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005288_210 0.1631618608 - - hypothetical protein VITISV_017217 [Vitis vinifera]
17 Hb_000540_040 0.163564015 - - PREDICTED: chitinase 2 [Amborella trichopoda]
18 Hb_009222_080 0.165613646 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
19 Hb_002671_060 0.1664741047 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
20 Hb_000028_580 0.1675392549 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000979_160 Hb_000979_160 Hb_001976_020 Hb_001976_020 Hb_000979_160--Hb_001976_020 Hb_000959_120 Hb_000959_120 Hb_000979_160--Hb_000959_120 Hb_007027_010 Hb_007027_010 Hb_000979_160--Hb_007027_010 Hb_002097_080 Hb_002097_080 Hb_000979_160--Hb_002097_080 Hb_001247_270 Hb_001247_270 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080 Hb_001976_020--Hb_002097_080 Hb_098795_030 Hb_098795_030 Hb_001976_020--Hb_098795_030 Hb_002685_220 Hb_002685_220 Hb_001976_020--Hb_002685_220 Hb_001976_020--Hb_000959_120 Hb_007590_100 Hb_007590_100 Hb_001976_020--Hb_007590_100 Hb_000095_070 Hb_000095_070 Hb_000959_120--Hb_000095_070 Hb_000959_120--Hb_001247_270 Hb_001728_130 Hb_001728_130 Hb_000959_120--Hb_001728_130 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_007027_010--Hb_004462_030 Hb_007027_010--Hb_001728_130 Hb_073808_010 Hb_073808_010 Hb_007027_010--Hb_073808_010 Hb_007027_010--Hb_000959_120 Hb_000540_040 Hb_000540_040 Hb_007027_010--Hb_000540_040 Hb_002097_080--Hb_002685_220 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580 Hb_029584_100 Hb_029584_100 Hb_001247_270--Hb_029584_100 Hb_009535_030 Hb_009535_030 Hb_001247_270--Hb_009535_030 Hb_001247_270--Hb_003006_080 Hb_004522_030 Hb_004522_030 Hb_001247_270--Hb_004522_030 Hb_001247_270--Hb_073808_010 Hb_030312_030 Hb_030312_030 Hb_003006_080--Hb_030312_030 Hb_005116_140 Hb_005116_140 Hb_003006_080--Hb_005116_140 Hb_002805_090 Hb_002805_090 Hb_003006_080--Hb_002805_090 Hb_000473_120 Hb_000473_120 Hb_003006_080--Hb_000473_120 Hb_019654_110 Hb_019654_110 Hb_003006_080--Hb_019654_110 Hb_010381_020 Hb_010381_020 Hb_003006_080--Hb_010381_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.510916 6.02213 1.40707 11.3034 0.366348 0.79342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.32562 0.394224 0.66128 5.18724 6.74482

CAGE analysis