Hb_004462_030

Information

Type -
Description -
Location Contig4462: 48177-59869
Sequence    

Annotation

kegg
ID pop:POPTR_0013s05640g
description POPTRDRAFT_1096821; hypothetical protein
nr
ID XP_012069611.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A067KVJ5
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_02160 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43029: 48318-48497 , PASA_asmbl_43033: 54424-54713 , PASA_asmbl_43035: 58184-58678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004462_030 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
2 Hb_007027_010 0.1264346912 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
3 Hb_000095_070 0.1304334123 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000959_120 0.1324395303 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
5 Hb_060198_010 0.1399715566 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_001143_140 0.1487516886 - - Aldehyde dehydrogenase, putative [Ricinus communis]
7 Hb_000979_160 0.1501620876 - - hypothetical protein RCOM_0629030 [Ricinus communis]
8 Hb_000245_100 0.1562339924 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
9 Hb_001728_130 0.1575919031 - - alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_000347_420 0.158994461 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
11 Hb_002814_050 0.1606881695 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
12 Hb_000477_010 0.1607317603 - - PREDICTED: potassium channel AKT1-like [Jatropha curcas]
13 Hb_004307_070 0.1616963118 - - kinase, putative [Ricinus communis]
14 Hb_003835_030 0.1621657624 - - glycosyltransferase, partial [Arabidopsis thaliana]
15 Hb_001976_020 0.1625501563 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002374_520 0.1659994168 - - early nodulin 8 precursor family protein [Populus trichocarpa]
17 Hb_000589_240 0.1667113001 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_012743_020 0.1668083052 - - serine/threonine protein phosphatase, putative [Ricinus communis]
19 Hb_009222_080 0.1669791895 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
20 Hb_000899_060 0.1677005188 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]

Gene co-expression network

sample Hb_004462_030 Hb_004462_030 Hb_007027_010 Hb_007027_010 Hb_004462_030--Hb_007027_010 Hb_000095_070 Hb_000095_070 Hb_004462_030--Hb_000095_070 Hb_000959_120 Hb_000959_120 Hb_004462_030--Hb_000959_120 Hb_060198_010 Hb_060198_010 Hb_004462_030--Hb_060198_010 Hb_001143_140 Hb_001143_140 Hb_004462_030--Hb_001143_140 Hb_000979_160 Hb_000979_160 Hb_004462_030--Hb_000979_160 Hb_007027_010--Hb_000979_160 Hb_001728_130 Hb_001728_130 Hb_007027_010--Hb_001728_130 Hb_073808_010 Hb_073808_010 Hb_007027_010--Hb_073808_010 Hb_007027_010--Hb_000959_120 Hb_000540_040 Hb_000540_040 Hb_007027_010--Hb_000540_040 Hb_002814_050 Hb_002814_050 Hb_000095_070--Hb_002814_050 Hb_000095_070--Hb_060198_010 Hb_000347_420 Hb_000347_420 Hb_000095_070--Hb_000347_420 Hb_000095_070--Hb_001728_130 Hb_000095_070--Hb_000959_120 Hb_004307_070 Hb_004307_070 Hb_000095_070--Hb_004307_070 Hb_001247_270 Hb_001247_270 Hb_000959_120--Hb_001247_270 Hb_000959_120--Hb_000979_160 Hb_000959_120--Hb_001728_130 Hb_001976_020 Hb_001976_020 Hb_000959_120--Hb_001976_020 Hb_002010_070 Hb_002010_070 Hb_060198_010--Hb_002010_070 Hb_143629_200 Hb_143629_200 Hb_060198_010--Hb_143629_200 Hb_060198_010--Hb_001143_140 Hb_000465_450 Hb_000465_450 Hb_060198_010--Hb_000465_450 Hb_001706_020 Hb_001706_020 Hb_060198_010--Hb_001706_020 Hb_001143_140--Hb_004307_070 Hb_012743_020 Hb_012743_020 Hb_001143_140--Hb_012743_020 Hb_026144_030 Hb_026144_030 Hb_001143_140--Hb_026144_030 Hb_002000_130 Hb_002000_130 Hb_001143_140--Hb_002000_130 Hb_003226_030 Hb_003226_030 Hb_001143_140--Hb_003226_030 Hb_000614_190 Hb_000614_190 Hb_001143_140--Hb_000614_190 Hb_000979_160--Hb_001976_020 Hb_002097_080 Hb_002097_080 Hb_000979_160--Hb_002097_080 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.452033 0.113495 0.757625 0.0182452 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0261278 0.00685413 0.0395835 0.382471 0.471212

CAGE analysis