Hb_143629_200

Information

Type -
Description -
Location Contig143629: 139741-142860
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00300g
description POPTRDRAFT_570648; hypothetical protein
nr
ID XP_002318920.1
description hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I6B8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s00300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11505: 139617-143072
cDNA
(Sanger)
(ID:Location)		 018_I03.ab1: 139693-141470 , 030_F02.ab1: 139693-141473 , 052_C01.ab1: 139693-141491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143629_200 0.0 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
2 Hb_001706_020 0.0862125034 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
3 Hb_000215_290 0.0953149519 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
4 Hb_002010_070 0.0992688263 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
5 Hb_144449_010 0.1055958161 - - Potassium transporter, putative [Ricinus communis]
6 Hb_000868_130 0.1064519741 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
7 Hb_000959_010 0.1069948538 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_006040_170 0.113944712 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
9 Hb_002344_080 0.1146587031 - - PREDICTED: protein YLS2-like [Populus euphratica]
10 Hb_060198_010 0.1148054735 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_003177_090 0.1151532893 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
12 Hb_002902_070 0.1163793666 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
13 Hb_004607_160 0.1176049855 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
14 Hb_005488_030 0.1180233402 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
15 Hb_003266_010 0.1186267242 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
16 Hb_032695_010 0.1186356239 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
17 Hb_001046_030 0.1235162227 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_003680_010 0.1235867171 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001486_100 0.124437864 - - tubulin alpha chain, putative [Ricinus communis]
20 Hb_000917_210 0.124494629 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_143629_200 Hb_143629_200 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_001706_020--Hb_000215_290 Hb_001174_030 Hb_001174_030 Hb_001706_020--Hb_001174_030 Hb_005488_030 Hb_005488_030 Hb_001706_020--Hb_005488_030 Hb_001544_070 Hb_001544_070 Hb_001706_020--Hb_001544_070 Hb_000472_020 Hb_000472_020 Hb_001706_020--Hb_000472_020 Hb_144703_010 Hb_144703_010 Hb_000215_290--Hb_144703_010 Hb_000025_590 Hb_000025_590 Hb_000215_290--Hb_000025_590 Hb_000215_290--Hb_001174_030 Hb_000215_290--Hb_005488_030 Hb_002010_070--Hb_001706_020 Hb_001143_140 Hb_001143_140 Hb_002010_070--Hb_001143_140 Hb_060198_010 Hb_060198_010 Hb_002010_070--Hb_060198_010 Hb_002010_070--Hb_144703_010 Hb_002010_070--Hb_001174_030 Hb_000473_100 Hb_000473_100 Hb_144449_010--Hb_000473_100 Hb_003266_010 Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020 Hb_000856_200 Hb_000856_200 Hb_144449_010--Hb_000856_200 Hb_001046_030 Hb_001046_030 Hb_000868_130--Hb_001046_030 Hb_002902_070 Hb_002902_070 Hb_000868_130--Hb_002902_070 Hb_017358_020 Hb_017358_020 Hb_000868_130--Hb_017358_020 Hb_000868_130--Hb_000473_100 Hb_000069_540 Hb_000069_540 Hb_000868_130--Hb_000069_540 Hb_000868_130--Hb_003266_010 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_006040_170 Hb_006040_170 Hb_000959_010--Hb_006040_170 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_007237_010 Hb_007237_010 Hb_000959_010--Hb_007237_010 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.363869 18.4099 15.0423 24.3628 0.223041 0.684312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0652094 0.0684124 0.227234 15.1349 33.9735

CAGE analysis