Hb_000959_010

Information

Type -
Description -
Location Contig959: 4010-6339
Sequence    

Annotation

kegg
ID rcu:RCOM_0075630
description hypothetical protein
nr
ID XP_012075261.1
description PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
swissprot
ID Q40593
description Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1
trembl
ID A0A067KTX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09433 PE=4 SV=1
Gene Ontology
ID GO:0016126
description violaxanthin de- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63618: 4076-4571 , PASA_asmbl_63619: 4576-5067 , PASA_asmbl_63620: 5389-5559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_010 0.0 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
2 Hb_143629_200 0.1069948538 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
3 Hb_001486_100 0.1207259033 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_006040_170 0.1212772438 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
5 Hb_005305_030 0.1229384251 - - hypothetical protein JCGZ_25922 [Jatropha curcas]
6 Hb_007237_010 0.1261750367 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000237_160 0.1305568372 - - BEL1-like homeodomain protein 1 [Morus notabilis]
8 Hb_000215_290 0.1311114448 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
9 Hb_005183_040 0.1331817122 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_005488_030 0.1338894265 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
11 Hb_003177_090 0.1353427888 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
12 Hb_000917_210 0.1368893838 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001883_010 0.1375277532 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_000465_450 0.1383805072 - - triacylglycerol lipase, putative [Ricinus communis]
15 Hb_011242_010 0.1402201025 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
16 Hb_003680_010 0.1410663609 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_006414_010 0.1438993875 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
18 Hb_002636_070 0.1453680517 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
19 Hb_001706_020 0.1462757021 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
20 Hb_001689_030 0.1462931321 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_010 Hb_000959_010 Hb_143629_200 Hb_143629_200 Hb_000959_010--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_006040_170 Hb_006040_170 Hb_000959_010--Hb_006040_170 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_007237_010 Hb_007237_010 Hb_000959_010--Hb_007237_010 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_006040_170--Hb_003177_090 Hb_006040_170--Hb_143629_200 Hb_006040_170--Hb_001486_100 Hb_060198_010 Hb_060198_010 Hb_006040_170--Hb_060198_010 Hb_002344_080 Hb_002344_080 Hb_006040_170--Hb_002344_080 Hb_092029_010 Hb_092029_010 Hb_005305_030--Hb_092029_010 Hb_000465_450 Hb_000465_450 Hb_005305_030--Hb_000465_450 Hb_000767_010 Hb_000767_010 Hb_005305_030--Hb_000767_010 Hb_000522_010 Hb_000522_010 Hb_005305_030--Hb_000522_010 Hb_005305_030--Hb_007237_010 Hb_007237_010--Hb_060198_010 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_007237_010--Hb_000465_450 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_002983_090 Hb_002983_090 Hb_000237_160--Hb_002983_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.151615 4.71581 3.4605 5.02405 0.0101657 0.0686279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0246911 0.116562 0.551337 3.24878 9.50136

CAGE analysis