Hb_006040_170

Information

Type -
Description -
Location Contig6040: 144126-146312
Sequence    

Annotation

kegg
ID mtr:MTR_1g006220
description NADH-ubiquinone oxidoreductase chain
nr
ID XP_003588347.1
description NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
swissprot
ID Q36284
description NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Zea mays GN=ND5 PE=3 SV=1
trembl
ID A9P666
description NADH dehydrogenase subunit 5 (Fragment) OS=Weigela hortensis GN=nad5 PE=4 SV=1
Gene Ontology
ID GO:0008137
description nadh dehydrogenase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_170 0.0 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
2 Hb_003177_090 0.0890305359 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
3 Hb_143629_200 0.113944712 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
4 Hb_001486_100 0.1161623598 - - tubulin alpha chain, putative [Ricinus communis]
5 Hb_000959_010 0.1212772438 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
6 Hb_060198_010 0.1269801429 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_002344_080 0.1291788046 - - PREDICTED: protein YLS2-like [Populus euphratica]
8 Hb_002010_070 0.1347675371 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
9 Hb_007237_010 0.1348918933 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001689_030 0.1353344792 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
11 Hb_002888_040 0.1386078211 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
12 Hb_002740_100 0.1400336706 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_002110_090 0.1424452001 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
14 Hb_002685_220 0.1487153787 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
15 Hb_000714_120 0.1493238168 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
16 Hb_000107_550 0.1498699094 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
17 Hb_001195_250 0.1502097007 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_000917_210 0.1522152561 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000103_410 0.1530143858 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
20 Hb_000181_230 0.1553282567 - - copper ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006040_170 Hb_006040_170 Hb_003177_090 Hb_003177_090 Hb_006040_170--Hb_003177_090 Hb_143629_200 Hb_143629_200 Hb_006040_170--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_006040_170--Hb_001486_100 Hb_000959_010 Hb_000959_010 Hb_006040_170--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_006040_170--Hb_060198_010 Hb_002344_080 Hb_002344_080 Hb_006040_170--Hb_002344_080 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200 Hb_001706_020 Hb_001706_020 Hb_143629_200--Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_143629_200--Hb_000215_290 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_143629_200--Hb_000959_010 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_001486_100--Hb_003177_090 Hb_000959_010--Hb_001486_100 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_007237_010 Hb_007237_010 Hb_000959_010--Hb_007237_010 Hb_000237_160 Hb_000237_160 Hb_000959_010--Hb_000237_160 Hb_000095_070 Hb_000095_070 Hb_060198_010--Hb_000095_070 Hb_060198_010--Hb_002010_070 Hb_060198_010--Hb_143629_200 Hb_001143_140 Hb_001143_140 Hb_060198_010--Hb_001143_140 Hb_000465_450 Hb_000465_450 Hb_060198_010--Hb_000465_450 Hb_060198_010--Hb_001706_020 Hb_002344_080--Hb_001689_030 Hb_000816_160 Hb_000816_160 Hb_002344_080--Hb_000816_160 Hb_000181_230 Hb_000181_230 Hb_002344_080--Hb_000181_230 Hb_002344_080--Hb_143629_200 Hb_000103_410 Hb_000103_410 Hb_002344_080--Hb_000103_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.602302 6.82248 4.54568 8.74982 0.353258 0.608984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.732752 5.41066 11.8904

CAGE analysis