Hb_000326_080

Information

Type -
Description -
Location Contig326: 85016-91261
Sequence    

Annotation

kegg
ID rcu:RCOM_1675270
description lrr receptor protein kinase, putative (EC:1.3.1.74)
nr
ID XP_002509489.1
description lrr receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGK4
description Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=2 SV=1
trembl
ID B9RBF5
description Lrr receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1675270 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at2g16250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34305: 86280-86413 , PASA_asmbl_34306: 87159-89654 , PASA_asmbl_34308: 87816-87947 , PASA_asmbl_34309: 89776-91425 , PASA_asmbl_34310: 91670-92066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000326_080 0.0 - - lrr receptor protein kinase, putative [Ricinus communis]
2 Hb_001486_100 0.0994900043 - - tubulin alpha chain, putative [Ricinus communis]
3 Hb_000252_260 0.1047456735 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_031862_120 0.1061984706 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
5 Hb_001951_230 0.1066594032 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
6 Hb_143871_010 0.1134386688 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
7 Hb_002740_100 0.1171012098 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_000215_290 0.1232432027 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
9 Hb_002344_080 0.1257316117 - - PREDICTED: protein YLS2-like [Populus euphratica]
10 Hb_143629_200 0.1262679143 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
11 Hb_000272_030 0.1265579372 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
12 Hb_000659_040 0.1266802313 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
13 Hb_002838_010 0.1274692926 - - AGPase large subunit protein [Hevea brasiliensis]
14 Hb_000941_090 0.1280424465 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
15 Hb_001689_030 0.128201442 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
16 Hb_006414_010 0.1292689968 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
17 Hb_000753_150 0.1306909682 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
18 Hb_000917_210 0.1365212651 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000363_250 0.1368907402 - - PREDICTED: pirin-like protein [Malus domestica]
20 Hb_000181_230 0.1377884638 - - copper ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000326_080 Hb_000326_080 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_031862_120 Hb_031862_120 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_001486_100--Hb_002740_100 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_000069_690 Hb_000069_690 Hb_000252_260--Hb_000069_690 Hb_000272_030 Hb_000272_030 Hb_000252_260--Hb_000272_030 Hb_000252_260--Hb_031862_120 Hb_000252_260--Hb_001951_230 Hb_000659_040 Hb_000659_040 Hb_000252_260--Hb_000659_040 Hb_031862_120--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_031862_120--Hb_000272_030 Hb_000215_290 Hb_000215_290 Hb_001951_230--Hb_000215_290 Hb_004907_070 Hb_004907_070 Hb_001951_230--Hb_004907_070 Hb_000363_250 Hb_000363_250 Hb_001951_230--Hb_000363_250 Hb_005271_180 Hb_005271_180 Hb_001951_230--Hb_005271_180 Hb_001357_060 Hb_001357_060 Hb_001951_230--Hb_001357_060 Hb_143871_010--Hb_000753_150 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_143871_010--Hb_000427_040 Hb_143871_010--Hb_005051_010 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002740_100--Hb_000181_230 Hb_002740_100--Hb_006414_010 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0323196 2.84873 2.21773 3.30044 0.0944113 0.269514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223879 0.0660666 0.0210751 1.29683 4.18435

CAGE analysis