Hb_031862_120

Information

Type -
Description -
Location Contig31862: 147544-151046
Sequence    

Annotation

kegg
ID rcu:RCOM_0884570
description hypothetical protein
nr
ID XP_012069184.1
description PREDICTED: root phototropism protein 3 [Jatropha curcas]
swissprot
ID Q9FMF5
description Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2
trembl
ID A0A067L8X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24949 PE=4 SV=1
Gene Ontology
ID GO:0000271
description root phototropism protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33627: 148551-148770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_120 0.0 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
2 Hb_143871_010 0.0787053042 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_000941_090 0.0884415529 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
4 Hb_005051_010 0.0990339365 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
5 Hb_000753_150 0.0999596635 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
6 Hb_000427_040 0.1010652883 - - Gibberellin receptor GID1, putative [Ricinus communis]
7 Hb_000272_030 0.1040793219 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
8 Hb_010222_060 0.1060225071 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000326_080 0.1061984706 - - lrr receptor protein kinase, putative [Ricinus communis]
10 Hb_032779_010 0.1087482734 - - unnamed protein product [Vitis vinifera]
11 Hb_001789_120 0.1116959263 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
12 Hb_000659_040 0.1126554734 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
13 Hb_014700_030 0.1147764668 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_001046_030 0.1177165193 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_004880_050 0.1197115033 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000868_130 0.121776321 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
17 Hb_002902_070 0.122220197 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
18 Hb_001242_040 0.1226392099 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
19 Hb_000856_200 0.1226825214 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
20 Hb_002838_010 0.1240108305 - - AGPase large subunit protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_031862_120 Hb_031862_120 Hb_143871_010 Hb_143871_010 Hb_031862_120--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_143871_010--Hb_000753_150 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_143871_010--Hb_000427_040 Hb_143871_010--Hb_005051_010 Hb_000326_080 Hb_000326_080 Hb_143871_010--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_000941_090--Hb_002838_010 Hb_001417_060 Hb_001417_060 Hb_000941_090--Hb_001417_060 Hb_001789_120 Hb_001789_120 Hb_000941_090--Hb_001789_120 Hb_000941_090--Hb_000272_030 Hb_000260_410 Hb_000260_410 Hb_000941_090--Hb_000260_410 Hb_001305_020 Hb_001305_020 Hb_005051_010--Hb_001305_020 Hb_005051_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_005051_010--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_000237_160 Hb_000237_160 Hb_000753_150--Hb_000237_160 Hb_000237_170 Hb_000237_170 Hb_000753_150--Hb_000237_170 Hb_001195_250 Hb_001195_250 Hb_000753_150--Hb_001195_250 Hb_000753_150--Hb_000326_080 Hb_000427_040--Hb_032779_010 Hb_002902_070 Hb_002902_070 Hb_000427_040--Hb_002902_070 Hb_000427_040--Hb_014700_030 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0662116 4.48962 3.8153 6.18402 0.109059 0.215312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0366911 0.0577429 0.0274997 1.34174 8.12496

CAGE analysis