Hb_000753_150

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig753: 153846-154847
Sequence    

Annotation

kegg
ID rcu:RCOM_1467360
description hypothetical protein
nr
ID XP_012080436.1
description PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
swissprot
ID Q8LDR0
description Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2
trembl
ID A0A067KGJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11766 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56914: 153627-155181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000753_150 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
2 Hb_143871_010 0.0831979546 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_031862_120 0.0999596635 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
4 Hb_000237_160 0.1043736744 - - BEL1-like homeodomain protein 1 [Morus notabilis]
5 Hb_000237_170 0.115635456 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
6 Hb_001195_250 0.1159652363 - - lrr receptor protein kinase, putative [Ricinus communis]
7 Hb_000326_080 0.1306909682 - - lrr receptor protein kinase, putative [Ricinus communis]
8 Hb_003517_090 0.138179368 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
9 Hb_002344_080 0.1431784492 - - PREDICTED: protein YLS2-like [Populus euphratica]
10 Hb_000363_050 0.1435965183 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
11 Hb_003177_090 0.1450348831 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
12 Hb_000787_210 0.1456484002 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000103_410 0.1472274852 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
14 Hb_022693_080 0.1495402157 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
15 Hb_002636_070 0.1533154376 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
16 Hb_000103_230 0.153320407 - - PREDICTED: chlorophyllase-2, chloroplastic [Jatropha curcas]
17 Hb_000427_040 0.1536627192 - - Gibberellin receptor GID1, putative [Ricinus communis]
18 Hb_000392_210 0.1556764979 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
19 Hb_000369_040 0.1562601357 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_000834_100 0.1565750209 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]

Gene co-expression network

sample Hb_000753_150 Hb_000753_150 Hb_143871_010 Hb_143871_010 Hb_000753_150--Hb_143871_010 Hb_031862_120 Hb_031862_120 Hb_000753_150--Hb_031862_120 Hb_000237_160 Hb_000237_160 Hb_000753_150--Hb_000237_160 Hb_000237_170 Hb_000237_170 Hb_000753_150--Hb_000237_170 Hb_001195_250 Hb_001195_250 Hb_000753_150--Hb_001195_250 Hb_000326_080 Hb_000326_080 Hb_000753_150--Hb_000326_080 Hb_143871_010--Hb_031862_120 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_000427_040 Hb_000427_040 Hb_143871_010--Hb_000427_040 Hb_005051_010 Hb_005051_010 Hb_143871_010--Hb_005051_010 Hb_143871_010--Hb_000326_080 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_031862_120--Hb_005051_010 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_002983_090 Hb_002983_090 Hb_000237_160--Hb_002983_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_001468_040 Hb_001468_040 Hb_000237_170--Hb_001468_040 Hb_000103_230 Hb_000103_230 Hb_000237_170--Hb_000103_230 Hb_022693_080 Hb_022693_080 Hb_000237_170--Hb_022693_080 Hb_011472_050 Hb_011472_050 Hb_000237_170--Hb_011472_050 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_000251_050 Hb_000251_050 Hb_001195_250--Hb_000251_050 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03197 36.7795 19.0387 32.1311 1.85513 2.64291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.252751 0.636122 0.219567 9.01701 62.9619

CAGE analysis