Hb_001269_520

Information

Type -
Description -
Location Contig1269: 547134-549287
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18130g
description POPTRDRAFT_758009; kinase family protein
nr
ID XP_012067489.1
description PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
swissprot
ID Q9SAH3
description Putative receptor-like protein kinase At1g80870 OS=Arabidopsis thaliana GN=At1g80870 PE=3 SV=1
trembl
ID A0A067LCY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26982 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase at1g80870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08223: 547126-547350 , PASA_asmbl_08224: 547782-549417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_520 0.0 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
2 Hb_000251_050 0.1110838146 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
3 Hb_002110_090 0.1163964496 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
4 Hb_000417_020 0.1181809676 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
5 Hb_001538_020 0.1186419385 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
6 Hb_001195_250 0.1261897451 - - lrr receptor protein kinase, putative [Ricinus communis]
7 Hb_000270_710 0.1372483366 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
8 Hb_000445_370 0.1454390298 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
9 Hb_000071_160 0.1483553358 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_002099_060 0.150978448 - - Protein AFR, putative [Ricinus communis]
11 Hb_000270_830 0.1515697037 - - aldehyde dehydrogenase, putative [Ricinus communis]
12 Hb_000964_170 0.1541472112 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
13 Hb_005724_040 0.1542983394 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
14 Hb_025045_010 0.1577473292 - - catalytic, putative [Ricinus communis]
15 Hb_000181_230 0.1593553685 - - copper ion binding protein, putative [Ricinus communis]
16 Hb_000042_060 0.1611580926 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
17 Hb_167775_010 0.163665366 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_000333_030 0.1650618412 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_003177_090 0.1653724785 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
20 Hb_001951_070 0.1661845971 - - putative protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_001269_520 Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_001269_520--Hb_000251_050 Hb_002110_090 Hb_002110_090 Hb_001269_520--Hb_002110_090 Hb_000417_020 Hb_000417_020 Hb_001269_520--Hb_000417_020 Hb_001538_020 Hb_001538_020 Hb_001269_520--Hb_001538_020 Hb_001195_250 Hb_001195_250 Hb_001269_520--Hb_001195_250 Hb_000270_710 Hb_000270_710 Hb_001269_520--Hb_000270_710 Hb_000251_050--Hb_002110_090 Hb_049293_010 Hb_049293_010 Hb_000251_050--Hb_049293_010 Hb_002099_060 Hb_002099_060 Hb_000251_050--Hb_002099_060 Hb_000251_050--Hb_001195_250 Hb_000418_150 Hb_000418_150 Hb_000251_050--Hb_000418_150 Hb_003177_090 Hb_003177_090 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_000181_230 Hb_000181_230 Hb_002110_090--Hb_000181_230 Hb_002110_090--Hb_002099_060 Hb_000417_020--Hb_001538_020 Hb_000417_020--Hb_000251_050 Hb_003702_070 Hb_003702_070 Hb_000417_020--Hb_003702_070 Hb_000071_160 Hb_000071_160 Hb_000417_020--Hb_000071_160 Hb_002320_090 Hb_002320_090 Hb_000417_020--Hb_002320_090 Hb_001538_020--Hb_000251_050 Hb_001538_020--Hb_002099_060 Hb_000714_120 Hb_000714_120 Hb_001538_020--Hb_000714_120 Hb_001538_020--Hb_002110_090 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_001195_250--Hb_003177_090 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_000270_710--Hb_002320_090 Hb_000696_190 Hb_000696_190 Hb_000270_710--Hb_000696_190 Hb_006916_030 Hb_006916_030 Hb_000270_710--Hb_006916_030 Hb_000270_830 Hb_000270_830 Hb_000270_710--Hb_000270_830 Hb_035834_010 Hb_035834_010 Hb_000270_710--Hb_035834_010 Hb_000964_170 Hb_000964_170 Hb_000270_710--Hb_000964_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25806 4.67997 5.95332 9.5066 1.78152 0.922791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124754 0.0654418 0.0932521 3.85718 13.2009

CAGE analysis