Hb_000417_020

Information

Type -
Description -
Location Contig417: 10366-14400
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07290g
description POPTRDRAFT_568706; hypothetical protein
nr
ID XP_012091781.1
description PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21573 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41212: 10582-11469 , PASA_asmbl_41213: 11655-14309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_020 0.0 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
2 Hb_001538_020 0.1073511475 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
3 Hb_001269_520 0.1181809676 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
4 Hb_000251_050 0.173005865 - - hypothetical protein JCGZ_21678 [Jatropha curcas]
5 Hb_003702_070 0.1740463948 - - unnamed protein product [Vitis vinifera]
6 Hb_000071_160 0.1889520808 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_002320_090 0.1910688845 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
8 Hb_011021_010 0.1911078946 - - kinase, putative [Ricinus communis]
9 Hb_000270_710 0.1920962927 - - PREDICTED: WAT1-related protein At5g40240-like isoform X1 [Jatropha curcas]
10 Hb_014361_090 0.1926194887 - - acyl-CoA binding protein 3A [Vernicia fordii]
11 Hb_000964_170 0.1928647672 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
12 Hb_001951_070 0.1935331992 - - putative protein [Arabidopsis thaliana]
13 Hb_002110_090 0.1970088078 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
14 Hb_000445_370 0.1982905245 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
15 Hb_002687_020 0.2040846322 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000042_060 0.2054394949 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
17 Hb_000107_550 0.2070173662 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
18 Hb_005724_040 0.2079519598 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
19 Hb_000167_040 0.2108489273 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
20 Hb_000333_030 0.2118372428 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_020 Hb_000417_020 Hb_001538_020 Hb_001538_020 Hb_000417_020--Hb_001538_020 Hb_001269_520 Hb_001269_520 Hb_000417_020--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_000417_020--Hb_000251_050 Hb_003702_070 Hb_003702_070 Hb_000417_020--Hb_003702_070 Hb_000071_160 Hb_000071_160 Hb_000417_020--Hb_000071_160 Hb_002320_090 Hb_002320_090 Hb_000417_020--Hb_002320_090 Hb_001538_020--Hb_001269_520 Hb_001538_020--Hb_000251_050 Hb_002099_060 Hb_002099_060 Hb_001538_020--Hb_002099_060 Hb_000714_120 Hb_000714_120 Hb_001538_020--Hb_000714_120 Hb_002110_090 Hb_002110_090 Hb_001538_020--Hb_002110_090 Hb_001269_520--Hb_000251_050 Hb_001269_520--Hb_002110_090 Hb_001195_250 Hb_001195_250 Hb_001269_520--Hb_001195_250 Hb_000270_710 Hb_000270_710 Hb_001269_520--Hb_000270_710 Hb_000251_050--Hb_002110_090 Hb_049293_010 Hb_049293_010 Hb_000251_050--Hb_049293_010 Hb_000251_050--Hb_002099_060 Hb_000251_050--Hb_001195_250 Hb_000418_150 Hb_000418_150 Hb_000251_050--Hb_000418_150 Hb_014990_010 Hb_014990_010 Hb_003702_070--Hb_014990_010 Hb_000692_100 Hb_000692_100 Hb_003702_070--Hb_000692_100 Hb_000462_190 Hb_000462_190 Hb_003702_070--Hb_000462_190 Hb_001322_100 Hb_001322_100 Hb_003702_070--Hb_001322_100 Hb_000482_120 Hb_000482_120 Hb_003702_070--Hb_000482_120 Hb_005941_030 Hb_005941_030 Hb_000071_160--Hb_005941_030 Hb_014361_090 Hb_014361_090 Hb_000071_160--Hb_014361_090 Hb_011828_010 Hb_011828_010 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_004899_340 Hb_004899_340 Hb_000071_160--Hb_004899_340 Hb_003929_190 Hb_003929_190 Hb_000071_160--Hb_003929_190 Hb_000964_170 Hb_000964_170 Hb_002320_090--Hb_000964_170 Hb_006916_030 Hb_006916_030 Hb_002320_090--Hb_006916_030 Hb_002320_090--Hb_000270_710 Hb_001266_120 Hb_001266_120 Hb_002320_090--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_002320_090--Hb_003632_030 Hb_001411_050 Hb_001411_050 Hb_002320_090--Hb_001411_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24951 4.00632 6.02646 13.4851 4.17403 0.526186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.02813 0 0.0423654 5.3636 13.3731

CAGE analysis