Hb_014990_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig14990: 49-557
Sequence    

Annotation

kegg
ID cic:CICLE_v100031791m
description hypothetical protein
nr
ID XP_006433016.1
description hypothetical protein CICLE_v100031791mg, partial [Citrus clementina]
swissprot
ID Q8L3R3
description Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2
trembl
ID V4T9M2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100031791mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014990_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v100031791mg, partial [Citrus clementina]
2 Hb_003702_070 0.1349808295 - - unnamed protein product [Vitis vinifera]
3 Hb_000654_050 0.1625442883 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
4 Hb_000692_100 0.1683893198 - - calcium-dependent protein kinase, putative [Ricinus communis]
5 Hb_001322_100 0.1718756567 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
6 Hb_001054_040 0.1722662805 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
7 Hb_087427_010 0.1802161565 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
8 Hb_006120_210 0.1827661915 - - gibberellin 20-oxidase, putative [Ricinus communis]
9 Hb_000274_050 0.1834988122 - - Squalene monooxygenase, putative [Ricinus communis]
10 Hb_007483_120 0.1871567238 - - 60S ribosomal protein L32A [Hevea brasiliensis]
11 Hb_002639_050 0.1874593745 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_000329_720 0.1874860705 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
13 Hb_000005_360 0.1875689388 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004678_030 0.1893731638 - - fructokinase [Manihot esculenta]
15 Hb_029142_040 0.1896549365 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
16 Hb_002539_050 0.1900885551 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
17 Hb_003032_060 0.1907678664 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_007749_020 0.1911990602 - - receptor-kinase, putative [Ricinus communis]
19 Hb_012308_050 0.193620381 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
20 Hb_003529_240 0.1945706981 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_014990_010 Hb_014990_010 Hb_003702_070 Hb_003702_070 Hb_014990_010--Hb_003702_070 Hb_000654_050 Hb_000654_050 Hb_014990_010--Hb_000654_050 Hb_000692_100 Hb_000692_100 Hb_014990_010--Hb_000692_100 Hb_001322_100 Hb_001322_100 Hb_014990_010--Hb_001322_100 Hb_001054_040 Hb_001054_040 Hb_014990_010--Hb_001054_040 Hb_087427_010 Hb_087427_010 Hb_014990_010--Hb_087427_010 Hb_003702_070--Hb_000692_100 Hb_000462_190 Hb_000462_190 Hb_003702_070--Hb_000462_190 Hb_003702_070--Hb_001322_100 Hb_000417_020 Hb_000417_020 Hb_003702_070--Hb_000417_020 Hb_000482_120 Hb_000482_120 Hb_003702_070--Hb_000482_120 Hb_004678_030 Hb_004678_030 Hb_000654_050--Hb_004678_030 Hb_012308_050 Hb_012308_050 Hb_000654_050--Hb_012308_050 Hb_002463_050 Hb_002463_050 Hb_000654_050--Hb_002463_050 Hb_000320_270 Hb_000320_270 Hb_000654_050--Hb_000320_270 Hb_000061_310 Hb_000061_310 Hb_000654_050--Hb_000061_310 Hb_000654_050--Hb_001054_040 Hb_000692_100--Hb_000482_120 Hb_004223_240 Hb_004223_240 Hb_000692_100--Hb_004223_240 Hb_000692_100--Hb_001054_040 Hb_000617_330 Hb_000617_330 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_001322_100--Hb_004223_240 Hb_001322_100--Hb_000692_100 Hb_001951_190 Hb_001951_190 Hb_001322_100--Hb_001951_190 Hb_002890_330 Hb_002890_330 Hb_001322_100--Hb_002890_330 Hb_000827_020 Hb_000827_020 Hb_001322_100--Hb_000827_020 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_002311_280 Hb_002311_280 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_000631_100 Hb_000631_100 Hb_087427_010--Hb_000631_100 Hb_033053_020 Hb_033053_020 Hb_087427_010--Hb_033053_020 Hb_189208_050 Hb_189208_050 Hb_087427_010--Hb_189208_050 Hb_008021_040 Hb_008021_040 Hb_087427_010--Hb_008021_040 Hb_024868_010 Hb_024868_010 Hb_087427_010--Hb_024868_010 Hb_006916_120 Hb_006916_120 Hb_087427_010--Hb_006916_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305537 0.785783 1.15264 1.95691 0.180594 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.372788 0.594945

CAGE analysis